Pseudomonas sp. StFLB209, PSCI_RS18930 (ligD)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. StFLB209 DNA, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
TGTGGTGCTGCACACCCGCGAGCATTTGGCGGCATTGATGCCGTTGGCTTCGGCGCTGGTGCTGGTATTGCTGCGTTGGCCGGAGCAGGTGCGTGATATG GATGAGACGCTGCAACTGAGCGAGGCGGTGACGGACGTCAAACTGAGTAAAGGCGAGCGGGATATGGCGAAAAAGCTGGTCAAGGACATGAGTGTCGACT GGCGGCCCGAGGACTACCGCGACACTTTTCAGGACAAGATCATGGCGTTGGTCAAGACCAAGGCCAAGCGCGGCAAATTGGAAGCCGTGGGTGGGCAAAG CCCGGATCCTGAGCGCAAACAGGCGGACGTGATTGACCTCACCGAGTTGCTGCGCCAGAGCTTGGCCGGCCAGAGCAGCCCGCGCAAGACCAAGGCGTCA GCCAGGACTTCGGCCAAGCCTGCCGCCAAGTCCGGTGAGGCCAAACCGGCAAGCCCTGGCAAACGCCGCCGCGCCGGGTAGTGATTGAAGGAGTCGCCAG
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| DNA Sequence for Gene |
>PSCI_RS18930
|ligD
ATGGTCAGCGAGTACACCCGCAAGCGCCGTTTCGATATCACCCGCGAACCGCCAGAGACCGGCACCCGCAGCAAGCGCAAGGCCGCTGGAGAGGCGCTTA GCTTTGCGATCCAGAAGCACGACGCCAGTCACTTGCACTACGACTTGCGTCTTGAACTGGACGGTACTCTGAAAAGCTGGGCGGTACCCAAAGGCCCGAG CCTGGACCCGGCACACAAGCGCCTGGCAGTGCAGGTCGAAGACCACCCGCTGGCGTACGCCAGCTTTGAAGGGCGTATTCCCGAAGGGCAGTATGGTGCC GGTGAGGTCATTGTCTGGGATCGCGGTATCTGGCAGCCGCACGGTGATCCGCGCAAGGGGTATGAAGCTGGCAAGCTGGAATTCACCCTGATCGGGGAAA AACTCAATGGCGAGTGGGCGTTAGTGCGCACCCGGCTCAAGGGCAGCGGGAATCGCAAGCAATGGCTGCTGATCAAGCGCAGCGACGATGCGGCGCGGCC GGTCGATGAATTTGATATCACCGTCGAGCGCCCCGACAGTGTCTTGAGTGACGCCACCCTCAGCCGAACCCGGCCGGCCAGGCCTGAGCAGCCGAAAAAA AACACAGCCTTTGTACACACGTTGAGCCCGCAACTGGCCACCCTGATCGACCGACCGCCGCCCGGCGACTGGCTGTATGAGATCAAGTACGACGGCTATC GCATCCTGACCTGCATCCACGCCGGTGAAGTGCGCCTGCTGAGTCGTACCGGCAATGACTGGACAGCACGGATGCAAAGGCTTGCCAAGGCGCTGGCCAG GCTGGGGCTTGAAGACAGCTGGCTCGACGGCGAGGTGGTGGTTCTCGATCGTGACGGCTTGCCGGATTTTCAGGCGTTGCAACGGGCATTTGATGAGCAC AGCGATGCACAGATCGTTTACTACCTGTTTGATGCGCCCTGGCTCAATGGCGATGACCTGCGCAAGCAGCCGCTGCAAGCGCGGCGTGAGGCTCTGGCCC AAGTGCTTGAAGGTCAGCGCAGCAAATTGATCAGATTCTCCGCAGGCTTTGCCGCCAGTCATCACGACATTGTCGAGAGTGCAAGGGCCATGGGCCTGGA AGGGGTCATTGGCAAACGTGCTGGCAGTCTCTACCAGGGCAAGCGCAGTGCTGACTGGATCAAGCTCAAATGCCGTCTGGCTCAGGAGTTTGTGATCGTC GGCTACACACCGCCCGAGGGTAGCCGTAGTGGTTTCGGCGCGTTGTTGCTGGCGGTCAATGATGCCAGGGCGGCAGGATTGGTGTACGCCGGGCGGGTCG GCAGCGGCTTTGACGGCAAGACGCTGCGCCAGCTCAAGCAACAGCTTGATGCATTGCAGCGTGACAGCTCGCCGTTATGCAAGCCGCTCAGTCGTGAGTT GAGCCGCGATGTGCACTGGGTTGAACCGCAGCTGGTCGCCGAGGTGCAGTTTGCCGAATGGACCCGAGATGCGCTTTTGCGTCAGGCCTCGTTCATCGGC TTGCGTACCGATAAGCCGGCGGCGCAGGTGCTGCGTGAGGTCGCCCGCCGAGCAGCTCTGCCGTTGGTGGATGAGGCGCAGCCGGACTCCTCAGAGCAGG CCACTAAAGCCTGCGTCGCCGGCGTCGCGATCAGTCACCCTGAACGGGTCATTGATCCGCAAAGCGGCGTCAGCAAGGCCGTTCTGGCGCAGTTCTATCT GGCCATTGCCGACCGGCTGCTGGCTGAGCTGAGCAAACGTCCGGTCGCGTTGCTGCGTTGCCCGCAAGGCATCGAGGGCGAGCAATTTTTCCAGAAACAT GCCCAGCGCTTGAGCATCCCGAATATCACTCAACTTGACGCGTCTCTGGACCCCGGTCATGCGCCGCTGCTGCAGATCGATAACCGGGCAGCGCTGGCCG GTGTGGTGCAGATGGGGGGAGTCGAGTTGCATACCTGGGGCGCTACCAGTGACCGGATTGAAACTCCGGACCGGCTGATCTTCGATCTCGATCCCGATCC GGCGCTGCCGTGGTGCAGCATGATCGAGGCCACCCAGATGCTCCTGGCGGTGCTCGATGAGCTGGGCCTGCAGGCCTTTCTGAAAACCAGCGGCGGCAAG GGCATGCACCTCATTGTGCCGCTGGCCCGGCACACCGGTTGGGATCAGGTGAAGCGCTTTGGCAAGGCGGTCGCCGAATTCATGAGTCGCCAGTTGCCCG AACGCTTCAGCGCTACGGCCGGCCCACAGAACCGGGTCGGGCGGATCTTTATTGACTATCTGCGCAATACCCGCGGCGGCACTACGGTGTCGGCCTGGTC AGTGCGCGCCCGACCTGGCCTGCCCGTGTCAGTGCCTGTCGGTCGCGATGAACTGGCGACCCTGAGCTCGGCCCGGCAATGGCACGTCGGCAACCTGGCG GAGCACTTGCGCGATCTGGACGAAGATCCATGGGCGGGCTATCACAATCGCCAGCGCATTACTCAGGCGATGTGGCGACAGTTGGGTATTGATGATTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCTTACGATTCGCGGTTGCCGCGTGCGGGTCTAGGCTTATGGTTTTGCTTGCCCGGCGCTGAGCGTTCAGCGCGGGTGCGTCACATACAAGGAGAATCCG CATGACGCCATCCTCATGCCTGACCCGTCGCCGTCTGCTGGCGCTGGCCGCTGGCACTGCCGCAGCCCTGAGCCTTGATTCGGCCAGCGGTGCTCAGCAG CCGGTCATGCAGCCTGTCACCGATTTTTCCGCCAAGCTTCCAGGAGACCGCACCATGCAGACTCGTGCAATCCCTTCAAGCAACGAGCCTTTGCCGGTGA TCGGCGTGGGTACCTATCGCGGCTTCGACGTCGCCACGTCAAGCCCGGCCTATAAACAATTGCGTAGCGTACTCGATGCGCTGTTCGCCGCCGGTGGCAC CGTGATCGACAGCTCGCCCATGTATGGTCGGGCCGAGCAGACCACTGGCGAACTGCTGTCTATCCACGAGCCGCGCTCGCCGGCTTTTCTGGCCACCAAG
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| Amino Acid Sequence |
>ATP-dependent DNA ligase
MVSEYTRKRRFDITREPPETGTRSKRKAAGEALSFAIQKHDASHLHYDLRLELDGTLKSWAVPKGPSLDPAHKRLAVQVEDHPLAYASFEGRIPEGQYGA GEVIVWDRGIWQPHGDPRKGYEAGKLEFTLIGEKLNGEWALVRTRLKGSGNRKQWLLIKRSDDAARPVDEFDITVERPDSVLSDATLSRTRPARPEQPKK NTAFVHTLSPQLATLIDRPPPGDWLYEIKYDGYRILTCIHAGEVRLLSRTGNDWTARMQRLAKALARLGLEDSWLDGEVVVLDRDGLPDFQALQRAFDEH SDAQIVYYLFDAPWLNGDDLRKQPLQARREALAQVLEGQRSKLIRFSAGFAASHHDIVESARAMGLEGVIGKRAGSLYQGKRSADWIKLKCRLAQEFVIV GYTPPEGSRSGFGALLLAVNDARAAGLVYAGRVGSGFDGKTLRQLKQQLDALQRDSSPLCKPLSRELSRDVHWVEPQLVAEVQFAEWTRDALLRQASFIG LRTDKPAAQVLREVARRAALPLVDEAQPDSSEQATKACVAGVAISHPERVIDPQSGVSKAVLAQFYLAIADRLLAELSKRPVALLRCPQGIEGEQFFQKH AQRLSIPNITQLDASLDPGHAPLLQIDNRAALAGVVQMGGVELHTWGATSDRIETPDRLIFDLDPDPALPWCSMIEATQMLLAVLDELGLQAFLKTSGGK GMHLIVPLARHTGWDQVKRFGKAVAEFMSRQLPERFSATAGPQNRVGRIFIDYLRNTRGGTTVSAWSVRARPGLPVSVPVGRDELATLSSARQWHVGNLA EHLRDLDEDPWAGYHNRQRITQAMWRQLGIDD
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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