Pseudomonas sp. StFLB209, PSCI_RS18930 (ligD)

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Molecular Function	GO:0005524	ATP binding	ISM Inferred from Sequence Model Term mapped from: InterPro:PF01068	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Biological Process	GO:0006310	DNA recombination	ISM Inferred from Sequence Model Term mapped from: InterPro:PF04679	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Biological Process	GO:0006281	DNA repair	ISM Inferred from Sequence Model Term mapped from: InterPro:PF04679	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0003910	DNA ligase (ATP) activity	ISM Inferred from Sequence Model Term mapped from: InterPro:PF04679	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database	Xref	Pathway	Version	Evidence	PMID
KEGG	pses03450	Non-homologous end-joining	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
PANTHER	PTHR42705	BIFUNCTIONAL NON-HOMOLOGOUS END JOINING PROTEIN LIGD	-	-	210	827	7.1E-102
Gene3D	G3DSA:3.90.920.10	DNA primase, PRIM domain	-	-	549	831	1.1E-90
NCBIfam	TIGR02776	JCVI: DNA ligase D	IPR014143	DNA ligase D	219	815	0.0
MobiDBLite	mobidb-lite	consensus disorder prediction	-	-	1	26	-
Pfam	PF04679	ATP dependent DNA ligase C terminal region	IPR012309	DNA ligase, ATP-dependent, C-terminal	409	505	1.4E-24
NCBIfam	TIGR02777	JCVI: DNA ligase D, 3'-phosphoesterase domain	IPR014144	DNA ligase D, 3'-phosphoesterase domain	3	162	4.3E-68
MobiDBLite	mobidb-lite	consensus disorder prediction	-	-	1	27	-
Pfam	PF01068	ATP dependent DNA ligase domain	IPR012310	DNA ligase, ATP-dependent, central	212	390	2.8E-27
CDD	cd04862	PaeLigD_Pol_like	IPR033651	LigD polymerase domain, PaeLigD-type	559	785	1.67545E-121
SUPERFAMILY	SSF50249	Nucleic acid-binding proteins	IPR012340	Nucleic acid-binding, OB-fold	395	512	3.77E-29
Gene3D	G3DSA:2.40.50.140	-	IPR012340	Nucleic acid-binding, OB-fold	393	513	1.6E-37
CDD	cd07971	OBF_DNA_ligase_LigD	-	-	395	510	1.45842E-50
SUPERFAMILY	SSF56091	DNA ligase/mRNA capping enzyme, catalytic domain	-	-	207	390	1.87E-43
NCBIfam	TIGR02779	JCVI: non-homologous end-joining DNA ligase, ligase domain	IPR014146	DNA ligase D, ligase domain	210	510	4.7E-104
Gene3D	G3DSA:3.30.1490.70	-	-	-	221	388	2.6E-46
Gene3D	G3DSA:3.30.470.30	DNA ligase/mRNA capping enzyme	-	-	232	347	2.6E-46
CDD	cd07906	Adenylation_DNA_ligase_LigD_LigC	-	-	208	392	6.11857E-76
Pfam	PF13298	DNA polymerase Ligase (LigD)	IPR014144	DNA ligase D, 3'-phosphoesterase domain	38	142	4.0E-39
NCBIfam	TIGR02778	JCVI: non-homologous end-joining DNA ligase, polymerase domain	IPR014145	DNA ligase D, polymerase domain	542	786	7.0E-84

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.