Pseudomonas sp. StFLB209, PSCI_RS09605

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas sp. StFLB209 DNA, complete genome. [Details]
DNA Sequence Upstream of Gene
CCCGAAACGTCCCGGACCCGGAAGACATCGCCAAGGCCCTGCGCCAGCCGTTGCTGGAGATTTTCCCGCCGGCACTGCTCGGTCGGCTGGTGACCATCCC GTATTACCCGCTCAGCGACAGCATGCTCAAGGCGATTACCGACCTGCAGCTGGGGCGCATCAAGAAGCGCGTGGAGAGCACCCACAAGGTGCCGTTCGAG TATGACGACGGCGTGATCGACCTGATTGTCTCGCGCTGCACCGAGACCGAAAGCGGCGGACGGATGATCGACGCCATTCTGACCAACACCCTGCTGCCGG ACATGAGCCGCGAGTTCCTGACCCGCATGCTCGAAGGCCAGCCGCTGGCCGGCGTGCGGATCAGCCAGCGCGACGGGCAGTTGCATTATGAATTCGCCGA GACGCCATGACCTGCCGCTGTAGGAGCGGCTTCAGCCGCGAAGGCTGCATGACTTCGCAGCTAAAGCTGCTCCTACAGGTTTTTACATAACGAGAGATCC
DNA Sequence for Gene
>PSCI_RS09605
ATGAATTTCCAGCAACTCACGCGTATGACCCAAGTCACCAGCCCGCTCGGGCCGGATGTGCTGTTGCTCAAGGACATGAGCGGTGGCGATGAGTTGGGCA GGTTGTTCAACTATGAGCTGCAACTGACTTCCAAGGACGGTGCGCTGGACCTCAATCAGTTGCTCGGCAAGCCCATGAGCCTGTCGGTGCAGCTGGGCGG CGGTGGCCAGCGTTACTTTCATGGCATCGTCGCGCGCTGCAGCCAGAACGTTGATCGTGGCCAGTTCGCCAGTTATCAGGTGACCCTGCGGCCCTGGCTG TGGCTGCTCAGTCGCACCTCGGACTGCCGGATCTTCCAGCACCTGAGCGTGCCGCAGATCATCAAGCAGGTGTTTCGTGATCTGGGTTTTTCTGATTTTG AAGACGCGCTGAGCCGTCCCTATCGCGAGTGGGAATACTGCGTGCAGTACCGCGAGACCAGCCTGGATTTTGTCAGCCGGCTGATGGAACACGAGGGCAT CTATTACTTTTTCCGCCATGAGCAGGACCGTCATGTGCTGGTGCTGGCCGACGCCTACGGCGCGCATCAGTCGGCGCCCGGCTACGCCTCGGTGCCGTAC TTTCCACCTGACGGCCAACACCGTGAACGCGACCACTTCAATGACTGGCGGCTGGCTCAGGAGGTGCAGCCCGGTTCACTGGAGCTTAATGACTACGACT TCGAACGGCCCAGCGCCCGCATGGAAGTGCGCTCGGCCATGCCGCGCCCGCACAGCGCCGGCGATTACCCGCTGTACGACTATCCCGGCGCCTACGTGCA GAGCCAGGACGGCGAGCACTATGCCCGCACCCGCCTGGAAGCCCTGCAAAGCCTGCATGAACGGGTCGAGCTGAGCGGCAATGCCCGCGGCCCCGGTGCC GGGAACCTGTTCAGCCTGACCGGCTTTGGCCGCCAGGATCAGAACCGTGAATACCTGGTGGTCGCCGGGCGTTATTACATCGCCCAGGAAAGCCTGGAGA GCGGCAACGGCGGCGGCTTGCAGTTCGAGGTCGGGCTGACCTGCATCGACGCCCAGCAGAGCTTCAAGCCGCTGGCGAGCACCATCAAACCGCTGGTGCA GGGGCCGCAGACCGCCCGTGTCGTCGGGCCGGCCGGTGAGGAGATCTGGACCGACCAATATGGCCGGGTGAAGGTGCATTTCTACTGGGACCGGCACGAT CAGTCCAACGAGAACAGCTCGTGCTGGATTCGGGTGTCGCAGTCCTGGGCCGGCAAGAACTGGGGCTCGATGCAGATTCCGCGCATCGGCCAGGAAGTGA TCGTCAGCTTTCTGGAAGGTGACCCCGACCGGCCGATCATCACCGGCCGGGTCTACAACGCCGAACAGACGGTGCCCTACGACCTGCCCGCCAACGCCAC CCAAAGCGGCATGAAAAGCCGCTCCAGCAAGGGCGGCACGCCGGCCAACTTCAATGAAATCCGCATGGAGGACAAGAAAGGTCAGGAGCAGTTGTTTATC CATGCCGAGCGTAATCAGGACATCGAGGTCGAGAACGACGAAACCCACTGGGTCGGGCATGACCGGCGCAAGACCATCGACCATGACGAAACCGTGCATG TGAAGCACGACCGTACCGAGACCGTGGATAACAACGAAACCATCACCGTGCATGCCAACCGCAGCAAGACGGTTGATCGCAACGAGACCGTGAAGATCGG CATGAACAAATCGGAAACCATCCTCATGGCCTCCTTGCAGAACGTCGGCATGGGCCGGATGGAAAACGTCGGCTTCGGCTACAGCCTCAACGTCGGGATG ATGATGAACACCCTGGTCGGCATGAGCCAGACCACCCAGGTGCTGAAAAAGAAATCCACCTCGGTAGGCGAGGCCTACACCCTCAGTGTCGGCGGCACTG ACGACGGCTCGACGATCAACATGGACGGCAAGACCATCAAGCTGGGCAGCAAGGTCATCGAGCTGACTGCCGACCAGGAAATTCGCCTGGCTTGCGGGCA GAGCACCATTCGTATCACGGCTAACGAAATCGAGATTCTTTCGCCCAATGTCGACATCAACTGCTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
TCTACAGCATGGACAACCAGGAATAGCGTCATGAGCGGCCTTCCCGTTTCGCATGTCGGTGAAAAAGTCTCCGGCAACGTGATTGCCACCGGCTCGCCGA CCGTACACGTCGGCAGTGTCGCTTCAGGTATGGCCGATCGCGCCTCGGCCTGTGTGCCCTTCGTCGGCCAGCCGGTCAACCCGATGCTGGGTTGCAAACT GTTGCCCGAAGAAGTCGACTTTGCCCTGGCGGCACCGGACACCCTGACCTTCAGCCGTGGCTACCTGTCGAGTAATCCGCGCATCAGTCGGCTCGGCCAG GGCTGGTCGCTGCCCGGCGAAAGCATGCTGCTGGAGCTGGACAGCGAAAGCTGCACCCTGACCGACGCCCAGGGCCGGCGGATTCGCTTTGCGGCGCTGG AGCCGGGCAAGCAGTGGTATTCAGGCAGTGAGCAACTCTGGCTGCGCCGCGGCGCGGCTTTTGACCCGCAAACCCCGCAAGCCCCCTGGTCAGGCCGCTG
Amino Acid Sequence
>type VI secretion protein ImpA
MNFQQLTRMTQVTSPLGPDVLLLKDMSGGDELGRLFNYELQLTSKDGALDLNQLLGKPMSLSVQLGGGGQRYFHGIVARCSQNVDRGQFASYQVTLRPWL WLLSRTSDCRIFQHLSVPQIIKQVFRDLGFSDFEDALSRPYREWEYCVQYRETSLDFVSRLMEHEGIYYFFRHEQDRHVLVLADAYGAHQSAPGYASVPY FPPDGQHRERDHFNDWRLAQEVQPGSLELNDYDFERPSARMEVRSAMPRPHSAGDYPLYDYPGAYVQSQDGEHYARTRLEALQSLHERVELSGNARGPGA GNLFSLTGFGRQDQNREYLVVAGRYYIAQESLESGNGGGLQFEVGLTCIDAQQSFKPLASTIKPLVQGPQTARVVGPAGEEIWTDQYGRVKVHFYWDRHD QSNENSSCWIRVSQSWAGKNWGSMQIPRIGQEVIVSFLEGDPDRPIITGRVYNAEQTVPYDLPANATQSGMKSRSSKGGTPANFNEIRMEDKKGQEQLFI HAERNQDIEVENDETHWVGHDRRKTIDHDETVHVKHDRTETVDNNETITVHANRSKTVDRNETVKIGMNKSETILMASLQNVGMGRMENVGFGYSLNVGM MMNTLVGMSQTTQVLKKKSTSVGEAYTLSVGGTDDGSTINMDGKTIKLGSKVIELTADQEIRLACGQSTIRITANEIEILSPNVDINC
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site