Pseudomonas sp. RIT288, BW33_RS24400 (ligD)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. RIT288 contigs7, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCACGCCGGGAAGCCGAGGTGCTGGCGGTGGACATCAATCCCGCCGCGCTGCGCCTGACCGCGATCAATGCGGCATTGGCCGAAGTCGCCAATGTCGAGG TGCAGACCAGTGATGTACTGCAGGGCACCGAAGGCAACTTCGACCTGATTGTCGCCAACCCGCCGTACATGGCCGATCCAGCCGGTCGCGCCTATCGGCA TGGCGGTGGCTCGCTCGGCGCCGGATTGTCGCTGCGCATCGTCGAGCAGGCGCTCAATCGGCTGGCTCCCGGTGGCTCGTTGCTGCTGTACACCGGCGTG GCCATGGTCGATGGCCGCGATCCGTTTTTCGACACCGTGGTGCCACGCCTGGATTCGACGCGATTCGGCTGGACCTATCGCGAACTCGATCCCGACGTGT TCGGTGAAGAATTGTTGAACCCCGGTTACCAGCGCGTGGACCGGATCGCCGTGGTCGCGCTGACCGTGACCCGCATTGGCTGACACAAGGCAGGTGCGCC
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| DNA Sequence for Gene |
>BW33_RS24400
|ligD
ATGAACAGGAACCTCGACGACTACAACCGCATGCGCGATTTCTCGGCGACCTCGGAGCCCGCCGCCGTCAAGCGCCGTGGCCGCAGCAAGGCCACTGAAC ATGCGCTGCAGTTTTGCATCCAGAAGCACGACGCTTCGCACCTGCATTATGACTTTCGCCTCGAACTCGAGGGGGCGCTGAAGAGCTGGGCGGTGCCCAA GGGGCCGTCCCTCGACCCCAAGGTCAAGCGTCTGGCGGTGCACGTCGAAGACCATCCGCTGGATTACGCGACGTTCGAGGGCAGCATTCCAGAAGGGCAT TACGGCGCGGGCGATGTGATCGTCTGGGACCGTGGCGTGTGGATCCCGCTGGAGGATCCGGCCAAGGCTTACACCAAGGGCAAGCTCAAGTTCGAACTGC AGGGAGAGAAGCTGTCGGGGATCTGGAATCTGGTGCGCACGCACATGCCGGGCAAGAAGGAAAACTGGTTTCTGATCAAACATCAGGACAGCGCTGCGCG GCCGCAAGACGATTACGATGTGCTCAGTGCGGAGCCGGACAGCGTGCTCAGCGAACGCACCCTGATCAGTAAACCCAAGCTCGCCGCCGAGCAAGCCAAG CCGGTGAAAAAGGCCCCGGCCAAACCGCGCAAAGCGGCGTCCGGGACGCTCACTGGGGCGCGCAAGGCCAAACTGCCGGCGCAACTCAAGCCGGAACTGG CGACCCTGGTCGACAGCGCACCCGAAGGACAGTGGAGTTACGAGATCAAGTTCGACGGTTACCGGATCATGGCGCGAATCGATCACGATCAGGTGCAACT GTTCACCCGCAATGGCCACGACTGGACGCATAAACTGCCGCAACAGGCGCAAGCACTGGCCGAGTTGGGGCTGGAATCGGCATGGCTGGACGGCGAAGTG GTGGTCACCAACGAACACGGTGTGCCGGACTTTCAGGCGCTGCAAAACGCCTTCGAAGCCGGGCGCAGCGCCAGCATCATGTACTACCTGTTCGACATGC CCTATCTCAACGGCGTCGACCTGCGCGAGGTGCCGGTCGAGGAGCGCCGCGCCGCGCTGTCCACGGTGCTCGGTGGGCATGAGCAGCCGTTGCTGCGCTT CTCCGAAGCTTTCGACGAAACTGCGGACGCACTGCTCAACAGCGCCTGTCAGATGCAGATGGAAGGGCTGATCGGCAAACGTCTCGGCTCGCCGTATGTG TCGCGGCGCAGCAGCGACTGGATCAAGCTCAAGTGCAAGCATCGTCAGGAGTTCGTGGTCGTCGGCTATACCGATCCGAAAGGCGCACGCAGTGCCTTCG GTGCTTTGCTGCTGGGCCTGCATGATCGCGACAGCGGCGAGTTGCGCTATGCCGGCAAGGTCGGCACCGGGTTCAACGAGACCACGTTGAAAAGCATCCT CGCCCAGCTAAAGCCGTTGCAGGTGAAAAAGGCTGCCGTGGTCAACCCGCCAAGCGGCTTCGACGCCAAAGGCGTGCACTGGCTCAAACCCAGTCTGTTG GCGGAAGTGGCGTTCGCCGAAATGACCAAGGACGGCTCGGTACGCCACGCTGTGTTCCATGGTCTGCGCAATGACAAGCCGGCCAAGTCGATTACCGAGG AGCGCGCGAAACCTGTGAAGACTTCAGCGAAAGCCACCCCGTCGAAAAAAGCTGCTCCTTCGAAGAAAACTGCCGCGTCGAAGAAAGCCGAAGCGGCGCC ATCACAGCTTGGCCTGGCCAGCGGCAAAGTGCGCATAACCCACCCGGATCGGGTGATCGATGCGGTCAGCGGCACCACCAAGATGCAATTGGCCGAGTAT TACGCCAGCGTCGCCGAGTGGATTCTGCCGCAGCTCAAGGATCGTCCGGTCGCACTGGTGCGGGCGCCGGATGGCATTGCCGGCGAGCTGTTCTTTCAGA AAAACGCCGAGCACCTGGCGATTCCCGGCATTACCACACTGGACAAGGAGGTCACCGGGCAGCCGGTGATGTTGATCAACAATGCCGAAGCCTTGATCGG TGCGGTGCAGATGAGCACGGTTGAATTGCACACCTGGAACGCCACCACCGTCGATCTGGACAAGCCTGATCGCTTCGTCCTCGATCTCGACCCTGACCCT GCGCTGCCGTGGAAAAGCATGGTCGAAGCCACGGCGCTGACCCTGACCGTACTGGACGAACTGGGGCTCAAGGCGTTTCTCAAGACCAGCGGCGGCAAGG GCATTCACCTGGTGGTGCCGTTGACCCGCAAACATGGCTGGGATGAGGTCAAGGACTTCAGCCACGCGATCGTCAGCCATATGGCCAAGCTGTTGCCAGA ACGGTTTTCTGCGGTGTCCGGGCCGAAAAATCGTGTCGGGCGGATCTTCATCGATTACCTGCGCAACGGTCTGGGCGCCACCACCATTTGTGCCTACGCC GCGCGTACCCGAGAGGGACTGCCGGTGTCGGTACCGCTGTTTCGCGAAGAGGTGGCCGAGATCAAGGGCGGCAATCAGTGGAACATCAGCAATGTCCATG AGCGTCTGAACGAGGTCGGTGACGAGCCGTGGGCCGACCTGAAGAAAACCCGCCAAAGCATCACCGCAGAGATGCGCAAGCGGGTCGGGATGAAACGCTG A
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCAAGTGTCGCGCAGCAAGTCGTGGGCGTTGAGCAGTTCGAAGGCGATTTCGGGGTGGTTGTTCAGGCCCCGGCGAATGGCGGCCGGGATTGATTTGCGG GTTTTGCGGCACAGTCCAGGCAGTGCCTCGATCTGAATCTCGATGCCGAGCATGCTGCGCACCTCATGAAACCCCGGAGCGACTTCCACGCGCAGGCCCA ACTGCTCGTGCATGCGCTGCTGCAGATGCCGCAAGTCCGCCAGGTCTTTGAGTTGTTCCAGGCGTGCCAGGAGGATTTTTTCCTGTTCGCGGGTCAGGCG CAGGATGCGCAGATCCGTGCCGGGCGTTTCCAGCAACGCGTCGCGCCCGCAATCGCAGGCGCCGGGCGGGCAGGGTGAGCGCAAGGGAGCAGGCGGCGCA AGAGTCGTCATGGCCTCCATCATAGAGGCCGTCGGACAGTTTTGCCTATGCGCCTTCAGCTGCCGTCCATCGGCCGCTGCGTCCCTGGCAACTACTGATT
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| Amino Acid Sequence |
>ATP-dependent DNA ligase
MNRNLDDYNRMRDFSATSEPAAVKRRGRSKATEHALQFCIQKHDASHLHYDFRLELEGALKSWAVPKGPSLDPKVKRLAVHVEDHPLDYATFEGSIPEGH YGAGDVIVWDRGVWIPLEDPAKAYTKGKLKFELQGEKLSGIWNLVRTHMPGKKENWFLIKHQDSAARPQDDYDVLSAEPDSVLSERTLISKPKLAAEQAK PVKKAPAKPRKAASGTLTGARKAKLPAQLKPELATLVDSAPEGQWSYEIKFDGYRIMARIDHDQVQLFTRNGHDWTHKLPQQAQALAELGLESAWLDGEV VVTNEHGVPDFQALQNAFEAGRSASIMYYLFDMPYLNGVDLREVPVEERRAALSTVLGGHEQPLLRFSEAFDETADALLNSACQMQMEGLIGKRLGSPYV SRRSSDWIKLKCKHRQEFVVVGYTDPKGARSAFGALLLGLHDRDSGELRYAGKVGTGFNETTLKSILAQLKPLQVKKAAVVNPPSGFDAKGVHWLKPSLL AEVAFAEMTKDGSVRHAVFHGLRNDKPAKSITEERAKPVKTSAKATPSKKAAPSKKTAASKKAEAAPSQLGLASGKVRITHPDRVIDAVSGTTKMQLAEY YASVAEWILPQLKDRPVALVRAPDGIAGELFFQKNAEHLAIPGITTLDKEVTGQPVMLINNAEALIGAVQMSTVELHTWNATTVDLDKPDRFVLDLDPDP ALPWKSMVEATALTLTVLDELGLKAFLKTSGGKGIHLVVPLTRKHGWDEVKDFSHAIVSHMAKLLPERFSAVSGPKNRVGRIFIDYLRNGLGATTICAYA ARTREGLPVSVPLFREEVAEIKGGNQWNISNVHERLNEVGDEPWADLKKTRQSITAEMRKRVGMKR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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