Pseudomonas sp. RIT288, BW33_RS24400 (ligD)

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Molecular Function	GO:0005524	ATP binding	ISM Inferred from Sequence Model Term mapped from: InterPro:PF01068	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Biological Process	GO:0006310	DNA recombination	ISM Inferred from Sequence Model Term mapped from: InterPro:PF04679	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0003910	DNA ligase (ATP) activity	ISM Inferred from Sequence Model Term mapped from: InterPro:PF04679	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Biological Process	GO:0006281	DNA repair	ISM Inferred from Sequence Model Term mapped from: InterPro:PF04679	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
Gene3D	G3DSA:3.30.470.30	DNA ligase/mRNA capping enzyme	-	-	253	368	7.3E-47
SUPERFAMILY	SSF50249	Nucleic acid-binding proteins	IPR012340	Nucleic acid-binding, OB-fold	414	534	1.83E-28
NCBIfam	TIGR02779	JCVI: non-homologous end-joining DNA ligase, ligase domain	IPR014146	DNA ligase D, ligase domain	231	532	3.7E-107
NCBIfam	TIGR02776	JCVI: DNA ligase D	IPR014143	DNA ligase D	241	848	0.0
Gene3D	G3DSA:3.90.920.10	DNA primase, PRIM domain	-	-	584	865	1.1E-93
SUPERFAMILY	SSF56091	DNA ligase/mRNA capping enzyme, catalytic domain	-	-	214	412	1.01E-46
Gene3D	G3DSA:3.30.1490.70	-	-	-	241	409	7.3E-47
PANTHER	PTHR42705	BIFUNCTIONAL NON-HOMOLOGOUS END JOINING PROTEIN LIGD	-	-	260	861	3.6E-104
MobiDBLite	mobidb-lite	consensus disorder prediction	-	-	195	219	-
CDD	cd07971	OBF_DNA_ligase_LigD	-	-	414	531	3.07266E-51
Pfam	PF04679	ATP dependent DNA ligase C terminal region	IPR012309	DNA ligase, ATP-dependent, C-terminal	430	526	1.3E-23
MobiDBLite	mobidb-lite	consensus disorder prediction	-	-	526	540	-
Gene3D	G3DSA:2.40.50.140	-	IPR012340	Nucleic acid-binding, OB-fold	413	534	2.2E-37
CDD	cd04862	PaeLigD_Pol_like	IPR033651	LigD polymerase domain, PaeLigD-type	594	818	1.16027E-117
Pfam	PF13298	DNA polymerase Ligase (LigD)	IPR014144	DNA ligase D, 3'-phosphoesterase domain	41	144	1.7E-38
Pfam	PF01068	ATP dependent DNA ligase domain	IPR012310	DNA ligase, ATP-dependent, central	230	411	7.4E-27
MobiDBLite	mobidb-lite	consensus disorder prediction	-	-	526	569	-
NCBIfam	TIGR02778	JCVI: non-homologous end-joining DNA ligase, polymerase domain	IPR014145	DNA ligase D, polymerase domain	577	819	3.9E-88
CDD	cd07906	Adenylation_DNA_ligase_LigD_LigC	-	-	229	412	7.40394E-84
NCBIfam	TIGR02777	JCVI: DNA ligase D, 3'-phosphoesterase domain	IPR014144	DNA ligase D, 3'-phosphoesterase domain	5	163	1.5E-70

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.