Pseudomonas sp. RIT288, BW33_RS12275
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. RIT288 contigs2, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ACTCGGACTTCAACGGCCCGAACGAGCGCTCGTGGAAGCTCAAGTACGCCTACGACTTCGCCGGTCTCGGTCTGCCGGGCCTGACCCCGGCAGTTTCCTA TTCGCGTGGCACCGTGGACCTGACCAAGGTCGATCCGGACAGCAAAGGCTATGCCTCGTGGTACAGCGCTGACGGTCGCAACGCCAAACACTGGGAACGC GACCTTGATCTGAAATACGTGGTGCAGAGCGGCCAGGCAAAAGACCTCGCGGTACGCCTGCAATGGGCGACCAACCGGGGTGGCAACGGTTACGGCGCGA TTGATACGGATACCGATGAATACCGTGTGATTGTCGACTACCCGATCAACGTCTTCTAAGATCAATCAGTTAACACTGAACCTGTAGGAGCTGCCGGAGG CTGCGATCTTTTGATCTTGTTTTTAAAAAACCAAGATCAAAAGATCGCAGCCTCCGGCAGCTCCTACGCTTATAAGATCCCCCAACCGACAGCCCCCATC
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| DNA Sequence for Gene |
>BW33_RS12275
ATGATCGCGAGCCGTACCCCACCTCTGGCGGGCAAGACCGGACGCCCCGAATTGCTGCTGATCTGCGGCAGTACGCTGACCGTGATCGCAATTCTGTGCA TCGTCACTTTTCTGCTGATTCGTGAGCACGCCAACGCTCAGGAAGCGGCCACCCGCAGCGCCACCACCATCGCCCAGTTGATCGACGCCGACGTCCTGCG CACGGTCGAGTTGTACGACCTGACCTTGCAAGGCCTGATCGCCGCCGCCCAGCGCGGCGACTTGCGCGATGTCACCCCGCAGATCCGCCATCTGGCACTG TTCGACCGCTCCACCACCGCACGCTTCAAGGGCGACATCCTGCTGCTCGACAAGCAGGGCGATGTGGTGGCCGACTCATCACGCATCGAACCCAAGCCAG GCAACTTTGCCGACCGCGATTACTTCCTCGCCCATGCCTTCAACCGCGATACCGGCATGTTCATCAGCCGCCCGTTCAAGACCCGCTGCGATTGCGACGA AGCCAATCAATGGCGCATCAGCTTCAGCCGGCGGATCTCCTCGGACACCGGTGAGTTCGCCGGCGTGGCGGTGGCTTCGATGAAGCTCGACTACTTCGAT CAGTTGTTCAACAGCCTCGACATCGGCAAAGACAGCACGCTGAACATCATCAACAGCGACGGCGTGCTGCTGGCGCAGAAGCCTTATCTGCAAAGCGACT CCATCGGCAAGAGCTTCGGCAACCGGCCCAACGTGGTGCGAATTCTCGGCGACAAGGATGGCAGTGGCAGTTTCACCAGCACCTCGAGCATGGATCATCA GCAACGGCTCTACACCTATTCTCGGGTCGGCAATCTGCCGCTGACGGTGATGGTCGCGCTCTCCAGTGATGAGGTGTTCGGCACCTGGCGCCGCACCGCG CTGTTGATCAGCGGCGCCACCGGCGTGCTATGCGCCGGGCTGCTATGGCTGACCTGGCTGCTCGCCCGTGAGCTGCGCTTGCGCCAGCGCGCGGAACGCG AACTGGCACAACTGGCGGCCACCGATGCGCTGACCGGCGTGGCCAACCGGCGGATGCTCGATCAGGCTCTGCGCCACGAATGGTTCCGCGCCCAGCGCTC GGGCCAGCCGCTGTCGGTGATGATGATCGACGCCGACCACTTCAAGGCCTTCAACGACCGTCATGGGCATCAGGCCGGTGATCAGGCGCTGCGTGAGCTG GCCAGGGTGATCACCGCGAACGTACGACGACCAGGGGATCTGGTCGCCCGTTACGGCGGCGAAGAGTTCTCGGTGATCCTCGCTGAAACCGACAGTAGCG GCGCCCGGCAGATTGCCGAACATATCCGTCAGGCGGTCGAGCAGATGCCGAGGGTCGAGGGCGCGGACGTGGCGATGACCGTCAGTATCGGTATCAGCAC CTGGACGGCAACCGTCGAGATGTCGCTGGAACAACTGCTGTTTGCGGCGGACAAGGCGTTGTATCAAGCCAAGGAGAGCGGGCGCAATCGCGTAGTCAGT TCGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GATCAAAAGATCGCAGCCTTCGGCAGCGCCTACGTTTGGAATACATTTCCCTGTAGGAACTGCCGAAGGCTGTGATCTTCTGCTTTTAATTGGGGCATAA AAAAAGGCCATCCGAGGATGGCCTTCAAAAAACTAGAGAGGTTTTTTACTTACACCGCCGCAACCGGGCGCATGTAAGAGATCGGTGCAGTGCTGGCGTC TTCGAACGTCACGACTTCCCACGCATCTGTCTGCTCAATCAACTTGCGCAGCAGCTGGTTGTTCAGTGCATGACCGGACTTGAAGCCTTTGAACTCACCA ATCAGGCTGTTACCCAGCAGGTACAGGTCGCCAATCGCATCGAGGATCTTGTGCTTAACGAATTCGTCTTCGTAGCGAAGGCCGTCTTCGTTCAGTACAC CATCGGAATCCACCACGATCGCGTTTTCAACGCTGCCGCCGAGTGCGAGGTTGTGCTTGCGCAGGTACTCGATGTCACTCATGAAACCGAAAGTACGGGC
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| Amino Acid Sequence |
>deoxyribonuclease
MIASRTPPLAGKTGRPELLLICGSTLTVIAILCIVTFLLIREHANAQEAATRSATTIAQLIDADVLRTVELYDLTLQGLIAAAQRGDLRDVTPQIRHLAL FDRSTTARFKGDILLLDKQGDVVADSSRIEPKPGNFADRDYFLAHAFNRDTGMFISRPFKTRCDCDEANQWRISFSRRISSDTGEFAGVAVASMKLDYFD QLFNSLDIGKDSTLNIINSDGVLLAQKPYLQSDSIGKSFGNRPNVVRILGDKDGSGSFTSTSSMDHQQRLYTYSRVGNLPLTVMVALSSDEVFGTWRRTA LLISGATGVLCAGLLWLTWLLARELRLRQRAERELAQLAATDALTGVANRRMLDQALRHEWFRAQRSGQPLSVMMIDADHFKAFNDRHGHQAGDQALREL ARVITANVRRPGDLVARYGGEEFSVILAETDSSGARQIAEHIRQAVEQMPRVEGADVAMTVSIGISTWTATVEMSLEQLLFAADKALYQAKESGRNRVVS S
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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