Pseudomonas sp. RIT288, BW33_RS04225
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Biological Process | GO:0006355 | regulation of transcription, DNA-templated |
Inferred from Sequence Model
Term mapped from: InterPro:PF00989
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Classifications Manually Assigned by PseudoCAP
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Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| SMART | SM00267 | duf1_3 | IPR000160 | GGDEF domain | 426 | 597 | 7.3E-64 |
| SUPERFAMILY | SSF141868 | EAL domain-like | IPR035919 | EAL domain superfamily | 612 | 857 | 4.97E-85 |
| FunFam | G3DSA:3.30.70.270:FF:000001 | Diguanylate cyclase domain protein | - | - | 432 | 598 | 3.9E-43 |
| NCBIfam | TIGR00254 | JCVI: diguanylate cyclase (GGDEF) domain | IPR000160 | GGDEF domain | 433 | 595 | 4.4E-43 |
| SMART | SM00091 | pas_2 | IPR000014 | PAS domain | 314 | 380 | 8.8E-7 |
| PANTHER | PTHR44757 | DIGUANYLATE CYCLASE DGCP | - | - | 288 | 859 | 0.0 |
| CDD | cd01949 | GGDEF | IPR000160 | GGDEF domain | 438 | 595 | 4.59396E-64 |
| Pfam | PF00990 | Diguanylate cyclase, GGDEF domain | IPR000160 | GGDEF domain | 438 | 592 | 6.4E-49 |
| Pfam | PF00563 | EAL domain | IPR001633 | EAL domain | 613 | 844 | 1.8E-70 |
| SUPERFAMILY | SSF55073 | Nucleotide cyclase | IPR029787 | Nucleotide cyclase | 442 | 598 | 1.62E-49 |
| CDD | cd01948 | EAL | IPR001633 | EAL domain | 613 | 846 | 9.07319E-103 |
| Pfam | PF00989 | PAS fold | IPR013767 | PAS fold | 314 | 423 | 6.3E-7 |
| SUPERFAMILY | SSF55785 | PYP-like sensor domain (PAS domain) | IPR035965 | PAS domain superfamily | 303 | 424 | 3.84E-18 |
| Gene3D | G3DSA:3.30.450.20 | PAS domain | - | - | 304 | 424 | 5.9E-18 |
| Coils | Coil | Coil | - | - | 295 | 315 | - |
| NCBIfam | TIGR00229 | JCVI: PAS domain S-box protein | IPR000014 | PAS domain | 310 | 430 | 8.3E-12 |
| Pfam | PF05228 | CHASE4 domain | IPR007892 | CHASE4 | 62 | 222 | 1.2E-16 |
| SMART | SM00086 | pac_2 | IPR001610 | PAC motif | 385 | 426 | 0.0022 |
| SMART | SM00052 | duf2_2 | IPR001633 | EAL domain | 607 | 849 | 2.1E-99 |
| CDD | cd00130 | PAS | IPR000014 | PAS domain | 323 | 423 | 1.13339E-8 |
| Gene3D | G3DSA:3.30.70.270 | - | IPR043128 | Reverse transcriptase/Diguanylate cyclase domain | 431 | 610 | 1.3E-59 |
| Gene3D | G3DSA:3.20.20.450 | EAL domain | IPR035919 | EAL domain superfamily | 611 | 864 | 1.5E-91 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.