Pseudomonas sp. PTA1, EW80_RS11425

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas sp. PTA1 EW80DRAFT_scaffold00009.9_C, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
ATCGCCGAAACCGACGCCCTCGACTGGGGCTGGCTGGCGGTGTCGCGTTCAGAACCGAACGAAGTGTTCGAACACCTGCGCAGCCTGACGCAGGTGAAAA TGCCGGATGGCACCGAGGTGTTTTTCCGGTTTTGGGATGGGCGGCATATTTATCCGATTCTGCGGGGGCTTGGGGAAAAGGCTGGAGAGGTGCTGCCGGT GTTTGAGCGGTATCTGATCAATGGGCAGGCGCTGGAAGTGGGCACGCGGGTGGTGCCGAAGGTCAAGGACTGGCCGTGGTGGGAGGTGCCGAAGGGGTTG TTGGAAGGGTTGAGCAAGGACAATCCGGCGACGCTGGTCAGCAACCTGATGCAGTGGCTGGAAGAAGACCGCCCGGACCTCTACACCGCATGGCCCGAGA ACAATCTGAAGCTGAAAATCACCCGCTTCGTGCGCCGCCCGGATGCGCCGCAAAATCTTAAAGAAGCATTGATAAACCACCTGATTCTGGAGCAAGGCTG
DNA Sequence for Gene
>EW80_RS11425
ATGGATCGCGTTGCCTTTGTTGACAACCAACTGAACACCTTCAAGGACAGTCTGAAGCTGTATCAGGAACAAACCAAAACCTGGTATGCACAGGCCCTCG ACAAGGGTAGCCGTGCCGCTGACATGCCGTCTTTGCTGGGTATGGAGCGTGTCATCAAGGTGGGCAACACCAGTAAAGCGGTGAGCATGACCGACGGTAA CTTCACCTCGAACGTGGCTCAATGTCCGCTCAAGGGTCCGTTGCTGATCGAGAGCAAATTCGAATCGGTTTACGACATTCCCGTCGGCGATATCGAAGTC GAAATCGTGGCCGTGGACGGTGGTGCTGTCAGCAAGGTCAAACTCGACGCCCAAGGCAAAGCCGCATGGACCGGCGGTGTGCCCGGCAAGTTCTACACGA TTCGCGTCCATAACGAAGTGACCCCGGCGCAGATCGACGCCCTCTTCAGTTCTTACAGCGGCGTGACTGCGGACCTTGAAGGTTTCCTGCGCAAGGAATG GGCCGGCTTCAAACCGCAATGGTCGAATCTTTCGACCTCCGGCACAGCCATGGCCATCGGCAACGGCATTCTTGAAGGTGGCTGGGAAGCGATCAAGGGC GTATGGGACGGCATCAGTCTCGTGCTCGACATCCTTCAGGACCCAGGAAAGTTTGCGAAGGATCTCGGCGCTGGCGCAGACGAGCTGATCAAAGTCGCCA AGAGCTCGCCGGACATCATGAAAAAGGCCATGTTGCTGGCCAGCGACGAGGCGGCTTTGTTTTTGCTGGTGCGCAGTGCGGTGATCTGGCTCGCGGGCTT GCCGCCGATGAAGATGGCGGGCGACGTAGCGAAGATGACCACGGCCATTGTCGTAGGCATTGCGATCGACATCGTGATCGGCGTGGTATTGACCATCGCG GCCGAAGGTACCGGCGTAATCTACCTTGCGGCCCGACTGAAGAAGTACGGAGAGCTTGTCATCAAGGCTGTGATCGGCTTCGTGAAGTCGGTGTTCAAGA TCATCAACGGTTTTATGGAGTATGTCGCCAAGTACACCGCTGTGGCGGCCCGAGGGATAACGGCAAAGGTCAGAAACGGGATTTCCGAGTTGCGTTTTGA TGGGAAGCGTGTGACCACCGTCGAAACCCCGAAAACCCGGCACGATGCCCCTGCACAATCCAAGACCCCAGATGAAAAAAGCGCAACTTGCGCAAAGAAC ACTTGCACTAACGGCTGCCCGGTCTCCATGGTCACTGGCGAAGAGCTACTGACGCTGACCGATGGAGAGCTCGGAGGGGCTGTACCATTTAGCTGGACTC GTCTCTATAGAACCAGCGCAGCGGAAATCGATTGTGGGCTGGGTTTTGGCTGGAGCCACGCGCTAGCACAGCGGTTAGAAATCAACGTCGATGAAGTGGT ATGGACCGATCATGAAAACCGGGTGATCACCTTCCCACTTCCAAGCATCCAACGCCCGGCGATAACCAATAGCCTCTCGGAAGCAGCCATCTTCATCGGG GACGATCCATCAGAACTTATTCTCACTCAGGCTGGTGAGCATGCTCAGTTCTATCACTTCCGCTACGATCGCAAAGGCGCAACACTGATAGCCATCAGTG ACAAATACGACAACCGCCTTCATGTCACGCGCGATATTCACAGTCGGATCAAACGTATCGACAATGGTGCCGGTCGTGCCTTGCTGTTGCGCTACGATCG CACGCATATTGTGGCGGTCGACTATCAACAGTTCACACCAGCAGACAATCTGGAAGACGGATGGACCACTGTCCAGACGATAATCAGTTATGCCTACGAC TCGCAACACCGCTTGATTGAAGCGAAAAACGCCGCTGGAGAAGCCGAGCGTTACGCCTATAACGATCAAAACGTCATTCTCGAGCGCCGTCTAGCCGGAG GTGCCAGCTTCTACTGGGAATGGGAAAGAGAGGGCAAATCTGCACGCTGTATTCATCACTGGGCGAACTTCTCGCAGATGGATACTCGCTACGTTTGGGA TGATAAGGGAAGTGTCACTGTCACGAACGCAGACGGTAGCGAAGAGATATACACCCACGACGACCAAGCCCGACTGGTTGCTCAAATTGATCCGGACGGA GCCGAAAATCTCAAGGCATATGACGAAAAGGGACGCCTGATCGCAGAGCAAAATCCGCTCGGAGCTATCACCGAATACCGATACAGCGAATCAGGGCACC TGGTCGCAGTCATACCTCCAGAAGACGAACCAACCGGCTACGAGTACAGCCGTGGGTTCGTAAGTAAGGTTGTTCGCGGTAAAGCAGTCTGGAAATATCA GCGCAACAATCAAGGCGATATCACCCAACAGACAGATCCAGAAGGCAACACCACCTACTACAGCTATGACCGTCGGGGCCGCCTGCAGGAAATCGGCCTG CCCGATGGCAGCCGGCACCAGTTGGGCTGGAATAGTCTCGGCCAGCTTCTGGAAGAGCGCCTGCCCGATGGTAGTCAGCGCAAATACCGTTACGACGCAC TCGGCCGGCAGATCACACGTCAGGACGAAAACGGTGCCATCACGCACTTCCAATGGGATGCCGCGAATCGCCTGGCACAAATTACTTTGCCCGGTGGAGC AACACGGGCATTTACATACAACGCATACGGTCGAGTCACCGCCGAACGCGACGAGCTCGGCCGTATCACCCGCTACGAATACGCTGACAACCTGCACCTC GTCAGCCGCCGCATCAATCCCGACGGCAGCCAACTGCGCTATCGCTACGACAACTCGCGCCTGCTGCTCACTGAAATTGAAAACGAGCGCGGCGAGCATT ACCACCTCGATTACTACGCCAACGGCCTGATCCAACAGGAAACAGGCTTCGATGGTCGTCGGACTGCCTACGAGTACGACCTGAACGGCCAACTACTGAA GAAAACCGAGTTCGGTGACGACGGTAGTGAACTGGTGACCGAATACCAGCGTGATGCCGCAGGCCGCTTGCTGGTCAAGACGCTGCCCGATGGTGACGAG ATTCATTACAGCTACGATGCGCTCGGTCGCCTTGTCAATGTCGATGACGGTCATTGGCCGCTCGCCTATAAATACGATTTGCAAGACCGACTCATCGAAG AACACCAGGGCTGGGGCACTCTGCGCTACGAATACGACAGCGTCGGCCAGCTCAAGCACTGCCGCTTGCCCGATGGCAGCAAACTCGATTACCGCCACCA GCCTGGCGGGCAACTCAGCAGCATCGACCTCAACGGCTCGCGCCTGACCAGCCACCAGTTCAGTGCCGGCCGCGAACAACAGCGCCAACAAGGCTTGCTG CTCAGCCAGTACCAATACGACGAACAGGGCCGTCTGCAAGCGCACAGCGTTAGCCAACGGGACAAGCACCTGTTCCAGCGTCGCTACAACTACGACGCCA ACGGCAACCTCGCCGGAATCGACGACAGCCGCAAAGGCAACCGCAGCTATCACTACGACCCGCTGGATCGCCTGATCAGCGTGCGCGGCGCCATACCAGA GAGCTTCGCCCATGACCCGGCAGGCAACCTCCTCGGACAAAATGACCTGCCCGTTGCGAATCTCGCCAACGTCAAAGGCAATCGCCTGCTCATGCAAGGC GACCGCCACTACGATTACGACGCCTATGGCAACCTGACCCGTGAAAGTCGCGGCACCGGACAAAAACTCGTCACCGAATACCGCTACGATTGCCAACACC GCTTAATCGGCGTCAGCCTGCCGGGAGGCAGCACCGCATCTTACAAATACGACGCCTTCGGCCGCCGCATCGAGAAAACCGTCGACGGCCATACCACTGA ATTCCTCTGGCAAGGCGAACGATTGATCGCCGAAAGCGCAGAAAATCGTTATCGCAGCTACATCTACGAACCGGGCAGCTTCCGCCCATTGGCAATGCTC GACGGCGAAGGCCCGCTAAAAGCGGCCCCGTTCTATTACCAACTCGACCACCTCGGCACACCGCAGGAACTCACCGACTACAGCGGCGAAATCATGTGGT CGGCAAAATACCGCGCCTACGGCAACCTCGCTGCGCTGGACATCAGCGAGATCGATAATCCGCTGCGTTTTCAAGGGCAGTATTTCGACGCCGAGACAGG GTTACATTACAACCGCCACCGCTATTACAATCCTGGGACTGGACGGTTTTTGACCCCGGATCCGATCAAGCTTGCGGGTGGGTTGAATAGCTACCAGTAC GTGCCTAACCCTACGGGGTGGGTGGATCCCCTAGGGTTGAATACTTGTCCAGGCGGAGATAAATGCGTTCCGGGGCAAAGCGCTGAAATACCTGAAGGAA AAGCCAGGGTAAGCGATGGAGCCCCGCCTCCTCCCGACGTTCAATGGACAAATCATGGCAATAAACATGTGGCGCCTAAGGCTCCTTGGCCATCTGTTGT AAAATCGACCGCTAATGGAGGTGCAGCTAAATATCTACCCGGCACGGACATTGAAGCGTTAGAGCGGCACGCGTTTGCAAATGGTCAAGATGTTAACAAC GGAAAACCATGGAAAGTAATTGACATGGGAAAAACCATAGGCGCCAATGACGGAAAAGAAACTCAGTACATGAGAGTGGAGTTAAGTGCAAACACAATAC ATGGACATCCAATATCAGAAGAATCGTTTAGAAAACTAACGAAAAAGAAGAAATGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
TTTATGAATCTTGAAAACATAAAAAAACTTGGTGGCAAGATAACTTTTGACGAAATATCCAGCCTAGTCGGATCGGATATTTCGCTCATTACAGATGAAT TAAGGGAGGATCTTTTGCAAGCGCTACTCCCGCACGAGCAAACAATAGACATTGGTTGGTATCCCGAATTCAGTGAACACGGCGCCTTCAGAATCTCATT AATAGCAAATCAAAATTGGGCATCGCCTATATACACCGAAACGGCCAAAACCTGGGCCGATCTTGAAAAAGCGTTAGACCATACATTGAATAAAGTAAAA ATTTAATGGATCGACGAGCTCGCGTTGACTAGCCAGCGTCGACGACGGTCGTTAGCCTTTCGCCTATAAATATGACTTGCAGACCAACTCATCGAGGAAC ACCAAGTCTGGGGCTCCTTGCGCTACGAATACGACAGCGTCGGCCAACTTAGCCACTGCCGTCTGCCGGATGGCTGCACGCTCGATTACCGTCATTTGTC
Amino Acid Sequence
>type IV secretion protein Rhs
MDRVAFVDNQLNTFKDSLKLYQEQTKTWYAQALDKGSRAADMPSLLGMERVIKVGNTSKAVSMTDGNFTSNVAQCPLKGPLLIESKFESVYDIPVGDIEV EIVAVDGGAVSKVKLDAQGKAAWTGGVPGKFYTIRVHNEVTPAQIDALFSSYSGVTADLEGFLRKEWAGFKPQWSNLSTSGTAMAIGNGILEGGWEAIKG VWDGISLVLDILQDPGKFAKDLGAGADELIKVAKSSPDIMKKAMLLASDEAALFLLVRSAVIWLAGLPPMKMAGDVAKMTTAIVVGIAIDIVIGVVLTIA AEGTGVIYLAARLKKYGELVIKAVIGFVKSVFKIINGFMEYVAKYTAVAARGITAKVRNGISELRFDGKRVTTVETPKTRHDAPAQSKTPDEKSATCAKN TCTNGCPVSMVTGEELLTLTDGELGGAVPFSWTRLYRTSAAEIDCGLGFGWSHALAQRLEINVDEVVWTDHENRVITFPLPSIQRPAITNSLSEAAIFIG DDPSELILTQAGEHAQFYHFRYDRKGATLIAISDKYDNRLHVTRDIHSRIKRIDNGAGRALLLRYDRTHIVAVDYQQFTPADNLEDGWTTVQTIISYAYD SQHRLIEAKNAAGEAERYAYNDQNVILERRLAGGASFYWEWEREGKSARCIHHWANFSQMDTRYVWDDKGSVTVTNADGSEEIYTHDDQARLVAQIDPDG AENLKAYDEKGRLIAEQNPLGAITEYRYSESGHLVAVIPPEDEPTGYEYSRGFVSKVVRGKAVWKYQRNNQGDITQQTDPEGNTTYYSYDRRGRLQEIGL PDGSRHQLGWNSLGQLLEERLPDGSQRKYRYDALGRQITRQDENGAITHFQWDAANRLAQITLPGGATRAFTYNAYGRVTAERDELGRITRYEYADNLHL VSRRINPDGSQLRYRYDNSRLLLTEIENERGEHYHLDYYANGLIQQETGFDGRRTAYEYDLNGQLLKKTEFGDDGSELVTEYQRDAAGRLLVKTLPDGDE IHYSYDALGRLVNVDDGHWPLAYKYDLQDRLIEEHQGWGTLRYEYDSVGQLKHCRLPDGSKLDYRHQPGGQLSSIDLNGSRLTSHQFSAGREQQRQQGLL LSQYQYDEQGRLQAHSVSQRDKHLFQRRYNYDANGNLAGIDDSRKGNRSYHYDPLDRLISVRGAIPESFAHDPAGNLLGQNDLPVANLANVKGNRLLMQG DRHYDYDAYGNLTRESRGTGQKLVTEYRYDCQHRLIGVSLPGGSTASYKYDAFGRRIEKTVDGHTTEFLWQGERLIAESAENRYRSYIYEPGSFRPLAML DGEGPLKAAPFYYQLDHLGTPQELTDYSGEIMWSAKYRAYGNLAALDISEIDNPLRFQGQYFDAETGLHYNRHRYYNPGTGRFLTPDPIKLAGGLNSYQY VPNPTGWVDPLGLNTCPGGDKCVPGQSAEIPEGKARVSDGAPPPPDVQWTNHGNKHVAPKAPWPSVVKSTANGGAAKYLPGTDIEALERHAFANGQDVNN GKPWKVIDMGKTIGANDGKETQYMRVELSANTIHGHPISEESFRKLTKKKK
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site