Pseudomonas sp. PTA1, EW80_RS11425
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|
Functional Classifications Manually Assigned by PseudoCAP
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Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| NCBIfam | TIGR03696 | JCVI: RHS repeat-associated core domain | IPR022385 | Rhs repeat-associated core | 1337 | 1413 | 2.0E-28 |
| Pfam | PF05593 | RHS Repeat | IPR031325 | RHS repeat | 771 | 804 | 4.1E-7 |
| NCBIfam | TIGR01643 | JCVI: YD repeat (two copies) | IPR006530 | YD repeat | 707 | 738 | 0.0014 |
| Gene3D | G3DSA:2.180.10.10 | - | - | - | 658 | 942 | 2.8E-39 |
| Gene3D | G3DSA:2.180.10.10 | - | - | - | 1022 | 1412 | 1.9E-84 |
| SUPERFAMILY | SSF69304 | Tricorn protease N-terminal domain | - | - | 639 | 936 | 9.81E-8 |
| Pfam | PF05593 | RHS Repeat | IPR031325 | RHS repeat | 985 | 1016 | 1.1E-6 |
| NCBIfam | TIGR01643 | JCVI: YD repeat (two copies) | IPR006530 | YD repeat | 810 | 850 | 4.8E-5 |
| NCBIfam | TIGR01643 | JCVI: YD repeat (two copies) | IPR006530 | YD repeat | 599 | 640 | 1.4E-4 |
| Pfam | PF05593 | RHS Repeat | IPR031325 | RHS repeat | 810 | 846 | 1.3E-6 |
| NCBIfam | TIGR01643 | JCVI: YD repeat (two copies) | IPR006530 | YD repeat | 1005 | 1035 | 5.9E-5 |
| NCBIfam | TIGR01643 | JCVI: YD repeat (two copies) | IPR006530 | YD repeat | 769 | 806 | 1.0E-5 |
| NCBIfam | TIGR01643 | JCVI: YD repeat (two copies) | IPR006530 | YD repeat | 852 | 893 | 1.6E-9 |
| NCBIfam | TIGR01643 | JCVI: YD repeat (two copies) | IPR006530 | YD repeat | 1229 | 1261 | 1.3E-6 |
| Pfam | PF20148 | Domain of unknown function (DUF6531) | IPR045351 | Domain of unknown function DUF6531 | 405 | 478 | 4.8E-19 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | - | - | 375 | 394 | - |
| Pfam | PF05593 | RHS Repeat | IPR031325 | RHS repeat | 873 | 910 | 3.9E-6 |
| PANTHER | PTHR32305 | - | - | - | 1312 | 1426 | 3.1E-41 |
| Pfam | PF03527 | RHS protein | IPR001826 | RHS protein | 1312 | 1344 | 7.0E-16 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.