Pseudomonas sp. MT-1, MT1_RS05555
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. MT-1. [Details] | |
| DNA Sequence Upstream of Gene |
GCTTGTCGAGCAAGGTGCTCGCGACCTGTTTAAGGGTTTCGACCGTCGTGTAGCCATTAACAATCTGCTGCTGGGACGCATCAGCGGCTTGCCGGACATG CTGCTGTACCGGGAACCGGTCAGGTTCGGAGCTCCAGTACCACCCGACCAAGAGGGCTACCAATAAGTAGAGGCCGATCAACAGGGCGATCCCCAGCAAT AGCGGATTGCGAGTCGCCCCATCCGCTCTGGCTGAGTTTCCCGACAAGCCGAGGCGGCCGAAGCGATTCTTCCAATCCAACATGGGCGTCTGTCCTTCTC TTCATAAATTCAAAGATTCGATCGCCGGTCACGCGGAGCGTGCGGCATGTGAACCACTATAACGCAGCCGGTCGGCGGCAAGCTTCATAATGAGAACTAG GCCGCCTATCCAGAGCCTTTGCTAACAACTGATAGGTGGTAGCATTGAGCCACCACAGTGGCCTCTGAGAGCACTGCCGCAGCGGGCCAGGGAACCGGAC
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| DNA Sequence for Gene |
>MT1_RS05555
ATGTCGGACCAAGAAGAACTTAAACAGCACTTCGCCCAACGGGTCATCCACCAGGCTCGGGAGGTGCTCGAAGTCTGGCAACAACTGCAACGCAGCGAAT GGAATGACGCTTACCGGTCTGATCTGGCTGATGCCAATCAGCGCTTACGAAAATTTGCCGAGCGCTTCGAGCAAACCGAACATCGACTGCTCGCGCTTGG CATCGAAGATTGCTTAGGCGACATCCGTGACAATCGCGGAAGACTGTCCAGCGACACCATCGCCACCCTCAGCCAGCTGGTCTACCGTCTTGCACGCACG GGTCTACGCCATGGCGATCCGCGCGGGCAGTCCGCCTACGTACCGCCGTTGAGCAAACCCGTCTACATCGCACTGGAAGACCACCAGCGCGCCCAACACG TGGTTCGCCAGCTCGAATTCTTCAGCATGAATGCGCAGGCTTTCGCCAGCGATGGCGAATTCCGCGCAGCGATGCATGAGCGGCACCCGGCGGCGATCGT CATGGACGTCGATTTCAATGGGCCCGGTGAAGGCCTGCGGCTTGCCGAGCGAATTCAGCAAGGACTGGATGAAAAGCTGCCGCTGATTTTCTTCAGCCAT CAGGAAACCGACACACCGATGCGATTGGCGGCCGTGCGCGCCGGAGGGCTGGAATTCTTCACAGGCACCATTGATGCGTCGTGCCTTCTGGAAAAAATCG AAATCTTCACCCGTACCGCGCACTACGAACCCTTCCGCGTCCTGATCATTGACGACTCGCGAGCCCAGGCGACACACACCGAAAGGGTGTTGAACAACGC GGGGATCATCACCCAAACGCTCAATGAGCCGATTCAGGCGATCACTTACCTCGCCGAATTCCAGCCGGATCTCATCATCCTCGACATGTACATGCCCGAG TGCATGGGTACTGAACTGGCCAAGGTGATCCGACAGCATGAGCGCTACGTCAGCGTGCCCATCATTTATCTCTCGGCCGAAGACGACCTCGACAAGCAGC TCGACGCCATGAACGAAGGCGGCGATGATTTTCTGACCAAACCGATCAAACCCAGCCATCTGATTGCCACGGTTCGCACCCGCGCTGAGCGGGCCCGCAG CTTGAAAGCCAGGATCGTCCGAGACAGCCTGACCGGCCTTTACAACCATACGCACAGCCTTCAACTGCTCGAAGACGCCAGCTCTCGTGCCCGCCGCGAC GGGCAACCGTTGTGCTTCGCAATGATCGATATCGATCATTTCAAGAAGGTCAACGACACCTATGGCCATCCAATGGGAGACAGGGTGATCAAGAGCCTCG CCCTGTTTCTCAAGCAACGCCTGCGCAAGACCGACCACATTGGCCGCTATGGTGGTGAGGAGTTTGCGGTGGTCATGCCCGACACCACTGTGCAGAACGC CGCGAAGGTGCTGGACGAAATACGCGAACGCTTCTCCGAAATCCGCTACCCGGCGCAGCCAGTCGATCTGTCCTGCACCTTTAGCTGCGGCATTGCCGAG CTCACCCCGAGCGCGGACATCAAATCCCTGACTCAGCAGGCAGACGAAGCGCTATACAACGCCAAACATGCTGGACGAAACCGAGTGGACAAGTTCCGGC CGTCACAGAACTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CATCAAACAGCCATATCTTCTAGCCTCCAGAATCCCCGGAGGCCAGGATGCGCCTGAAGTCCCTTACCACCCTGAATACCTTGCTGCTCGTCGCCATTTG CTTTGCCCTGGGCGCAACACTTTGGTGGTCGGAGCGTGCCCTGGAGCGTCCGTACCAGCTGATGGGTCAGTACCTGAGCCTTTCCCAGCGTTTTCAGCAT CAGGTCGCCGACAATATCCAAACCTACCTGAGCAGTGGTGACGCCCTACGACACAAGGCCGCCCTGACCGAACTAGAGGGGCTTGCAGCAGATGTGAGTG CCCTGCCCGGCCCGTTCGCCAATCGTCTGCAGCCGAGCTTGGAACAGCTCCACCAGTTCGCCGCTACTGAGCTGCTCGCCGCAGGCAAGCTGGCCGGCGA TCCTCAAGGCCTGCTACTGCAGGCCGAGCGTGAGATAGCAGGCGTACTGGAGCAGCTGCATCGCTATGCCGCGCAAGGTCAGCATGAAGCCGTCGCTCTC
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| Amino Acid Sequence |
>diguanylate cyclase
MSDQEELKQHFAQRVIHQAREVLEVWQQLQRSEWNDAYRSDLADANQRLRKFAERFEQTEHRLLALGIEDCLGDIRDNRGRLSSDTIATLSQLVYRLART GLRHGDPRGQSAYVPPLSKPVYIALEDHQRAQHVVRQLEFFSMNAQAFASDGEFRAAMHERHPAAIVMDVDFNGPGEGLRLAERIQQGLDEKLPLIFFSH QETDTPMRLAAVRAGGLEFFTGTIDASCLLEKIEIFTRTAHYEPFRVLIIDDSRAQATHTERVLNNAGIITQTLNEPIQAITYLAEFQPDLIILDMYMPE CMGTELAKVIRQHERYVSVPIIYLSAEDDLDKQLDAMNEGGDDFLTKPIKPSHLIATVRTRAERARSLKARIVRDSLTGLYNHTHSLQLLEDASSRARRD GQPLCFAMIDIDHFKKVNDTYGHPMGDRVIKSLALFLKQRLRKTDHIGRYGGEEFAVVMPDTTVQNAAKVLDEIRERFSEIRYPAQPVDLSCTFSCGIAE LTPSADIKSLTQQADEALYNAKHAGRNRVDKFRPSQN
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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