Pseudomonas sp. MRSN12121, TO66_RS28405
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. MRSN12121, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
ATCCAGCAGATCGCCCCGCCACGCACCCTTTACGAAGAGCCGAAGAACACCTTCGTCGCCAATTTCATCGGCGAGAACAACCGCCTCAACGGCCGCCTGC ACAGCCACAGTGGCGACCGCTGCGTGGTCGAGCTGGGCCGTGGCGAGAAGGTCGAGGCGCTGGCGGTCAACGTCGGCCGGCCCGGCGAGCCGGTGACCCT GTCGATCCGTCCGGAACGCGTGAGCCTCAACGGCTCCAGCGAAAGTTGTGTCAACCGCTTCTCAGGGAGGGTGGCGGAATTCATCTATCTGGGCGACCAC GTCCGGGTTCGCCTGGAAGTCTGTGGCAAGACCGACTTCTTCGTGAAACAGCCGATTGCCGAGCTCGATCCGGAGCTGGCGGTGGGCGATGTGGTTCCGC TCGGCTGGCAGGTCGAGCACGTGCGCGCGCTCGACCCACTTCTAGAGGCGCATTGATCGCCCCCTTGCTTCACCAACCCTGCACGTGGAGAGAACAATAA
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| DNA Sequence for Gene |
>TO66_RS28405
ATGTCGAGATCCCTGAAATTCACCGCTCCCCTTGGCGCTATCGCTGTGGCACTGGGCCTGATGGGCGCGACACACGCGATGGCGGCGGGCCCGGACCTGA CCGTGGTGTCCTTTGGCGGGGCGAACAAGGCGGCACAGGTCAAGGCCTTCTACGCCCCGTGGGAAGCCGCGGGCAACGGCAAGATCGTCGCCGGCGAGTA CAACGGCGAGATGGCCAAGGTCAAGGCCATGGTCGACACCAAGAGCGTGTCCTGGGACCTGGTGGAAGTCGAGTCGCCGGAGCTGTCCCGCGGTTGCGAC GAAGACATGTTCGAGCAGCTCGACCCGGCGCTGTTCGGCAAGGGCGAGGACTACGTCAAAGGCGCGATCCAGCCGTGCGGCGTGGGCTTCTTCGTCTGGT CGACCGTGCTGGCCTATAACGCCGACAAGCTGAAGACCGCGCCCACCAGCTGGGCGGATTTCTGGGACACCAAGAAATTCCCGGACAAGCGTGGCCTGCG CAAGGGCGCCAAGTACACCCTGGAGTTCGCCCTGATGGCCGACGGCGTGGCGCCCAAGGATGTGTACAAGGTGCTGGCCGGCAAGGACGGCCAGGATCGT GCCTTCAAGAAGCTCGATGAACTCAAGCCGAGCATTCAGTGGTGGGAAGCCGGCGCCCAGCCGCCGCAGTACCTGGCCTCCGGTGACGTGGTCATGAGCT CGGCCTACAACGGCCGGATTGCCGCGGTGCAGAAAGAAAGCAACCTGAAGGTGGTGTGGAACGGCGGCATCTACGACTTCGACGCCTGGGCCATTCCGAA GGGCCTGGACAAGACCCGTGCCGAAGCGGCGAAGAAGTTCATCGCCTTCTCGGTGCAGCCGCAGCAGCAGAAGACCTACTCGGAAAACATCGCCTACGGT CCGGCCAATACCCAGGCGGTGCCGCTGCTGGCCAAGGACATCCTGAAAGACATGCCGACCACCCCGGAAAACATCGCCAACCAGGTGCAGATCGACGTCA GCTTCTGGGCTGACAACGGCGAGCAACTGGAACAGCGCTTCAACGCCTGGGCCGCGAAGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCGCCATGCCGTAGGGAGCTTGTCCGCGATGGACGGTGACGGGGGCTGGCAGGCCTGCGCATCGCTGCATCGCGGGCAAGCCTCGCTCCTACAGGTGTTG CGTTGTTAACGGCAGCGGCGGCCTGTCCGCCCGCTGCAACGATCAAAGATTTGCGGAGTTCGTCATGGCCATTACCGTTCCCCTGAACGAGGTCAGCAGC CCCAGCCTCAAGCAGCGCCTGGCGCGCGCCGAGCGGGTCAACCGCTGGAAGGCGCAAGCGCTGATCGCGCCGCTGGTGCTGTTCCTGCTGCTGGTGTTTC TCGTGCCTATCGCGGCGCTGCTGTACAAGAGCGTCGGTAACCCGGAGGTGGTGGAAGGCATGCCGCGCACCGTCACCGCCGTGGCTGCCTGGGACGGACG CGGCCTGCCGGCCGAGCCGGTGTACAAGGCGCTGAGCGAAGACCTGGCCGAGGCGCGCAAGCATCAGACCCTCGGTGACCTGTCCAAGCGGCTGAACATG
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| Amino Acid Sequence |
>spermidine/putrescine ABC transporter substrate-binding protein
MSRSLKFTAPLGAIAVALGLMGATHAMAAGPDLTVVSFGGANKAAQVKAFYAPWEAAGNGKIVAGEYNGEMAKVKAMVDTKSVSWDLVEVESPELSRGCD EDMFEQLDPALFGKGEDYVKGAIQPCGVGFFVWSTVLAYNADKLKTAPTSWADFWDTKKFPDKRGLRKGAKYTLEFALMADGVAPKDVYKVLAGKDGQDR AFKKLDELKPSIQWWEAGAQPPQYLASGDVVMSSAYNGRIAAVQKESNLKVVWNGGIYDFDAWAIPKGLDKTRAEAAKKFIAFSVQPQQQKTYSENIAYG PANTQAVPLLAKDILKDMPTTPENIANQVQIDVSFWADNGEQLEQRFNAWAAK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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