Pseudomonas sp. HMP271, DP64_RS14395
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. HMP271 Pseudomonas_HMP271_contig_13, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GGCGCTGCTCCTCGGCACTCCCGAGATCGACCGGGTCGCTGTAAGACTCCTGCTCGCGCAGTCGGCCGAATTCTTCTTCGATACGGTCCTGCAACTCGGT CCGCTGGCCGAGCAGGCGCTGGCGGAAAAATGCCTGCTGCACCTCGTTCATGTAGGCGTCGGCAGGCATGGCAAGCAGCTCGGTTTCGCTAATCACGTTG GGTCTCGTCAGATGTTCTTACTGGACTTGTTATAACATATCATTTCTTGCAATCCTATACCTCGTCCATGATCAATACGGGGGGGCGGCACGCAGCGGCA TTTCGGTCGGTAAGATTGGCCTGTCACGCCGAGAGAGAGAATCCGTTCGCTGCGACGTGGCTTCCGCGTCGACGGTGATTCGCCTCGGTAGTGAGCCGCA TCATCCGGGCTGATCGGCTAGAATCCGCGTTCTCATCAATCTTCGGCGTGCTGATGCGGTTGCGATTGGCACGGCCACAGCCTACGGCCCCGCTTGCTAT
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| DNA Sequence for Gene |
>DP64_RS14395
ATGCCTTCTGCCCAGACCGCTGCCGAACGCATCGCCGAACTGCGTAGCGAAATCGACGCCCACAACTACCGTTATTACGTTCTCGACGAGCCGAGCGTTC CGGATGCCGAGTACGACCGTCTGTTCAATGAACTAAAGGCGCTGGAAGCCGAACATCCTGAGTTGGTGACGCCCGAGTCGCCGACCCAGCGCGTCGGTGG TGCGGCGTTGGCGGCGTTCGGCCAGGTACGCCACGAAGTGCCGATGCTGAGCCTCGGCAACGCCTTTGACGAACAGGATCTGCTCGACTTCGACCGCCGG GTCCGCGACGGGCTGGACCTGCCGGGCGGCGACCTGTTCAGCGCTGGCGCCGAGGTTGAATACAGCTGCGAACCCAAACTCGACGGCTTGGCCGTCAGCC TGCTCTACGAGAACGGTCATCTGGTGCGTGGTGCTACGCGCGGCGACGGCAGCACTGGCGAAGACATCAGCGCCAATGTACGCACCGTGCGCAATATCCC GCTCAAACTGCACGGCAGCGGTTGGCCGTCAGTGCTTGAAGTGCGCGGCGAAATCTACATGCCCAAGGCAGGCTTCGAAGCGCTCAATGCGCGGCAGGTG GAAAGTGGCGGCAAGCCCTTCGCCAATCCGCGCAACGCTGCGGCCGGCAGCCTGCGCCAGCTGGACCCTAAGATCACCGCCGCGCGTCCGCTTGAACTGT GCGCCTACGGTGTTGGGCGTAGCGATGGCGAGCTGCCGGATACCCATGTCGGTATTCTCAACGCGCTCAGAGAGTGGGGATTGCCCATCAGTCGAGAGCT GAAACTGGCCAAGGGCGTTGTCGAATGTCGCGCCTACTACGAGGCCATTGGCGAGAAGCGTGACGCGCTGGCCTACGAGATCGACGGTGTGGTGTTCAAG GTTAACTCCGTCGCGCAGCAGCGCGAGCTGGGTTTTCGAGCGCGCGAGCCGCGTTGGGCAATCGCCCACAAGTTCCCCGCGCGCGAGGAGATCACCGAGT TGCTCGGCGTCGAGTTCCAAGTCGGTCGTACTGGTGCGATCACCCCGGTGGCACGGCTAAAGCCGGTACAGGTCGCTGGCGTCACCGTCTCCAACGCGAC CCTGCACAACATGGATGAAGTCGCGCGTCTGGGCGTGATGATCGGCGATACGGTAATCGTGCGTCGCGCCGGCGATGTCATTCCGCAGATCCTCGGTGTG ATCGTCGAGCGCCGGCCGGCACACGCGCGGCCCGTACATGTGCCGGAGCGTTGTCCGGTCTGCGGTTCTGCCGTGGAGCGCACCCAGCTGATCAAGCGCA GCAAAGGGCGCGAATCGGTCAGCGAAGGTTCGATCTACCGTTGCGTCGGCCGGCTGGCGTGCCAGGCGCAGCTGAAGCAGGCGATCATCCACTTCGTCTC GCGCCGCGCAATGGATATCGACGGGCTAGGCGACAAGATCGTCGAGCAGCTGGTCGATCGCGGTCTGGTCGGCTCGCCCGCTGACCTTTATTGCCTGTCG TACGAGCAGGTAGTCGAGTTGGAAGGCTTCGCCGATCTCTCCACGCGCAATTTGCTCGACGCCATTGACGCCAGCCGCAAGCCCACGCTGGCGCGTTTCA TCTTCGCCCTCGGCATCCCCGATGTCGGCGAGGAAACCGCCAAGTTGCTGGCGCGAGCGCTGGGCTCGCTGGATCGCATCGCATGTGCATTGCCGGACGT GCTGGTGTACCTGCCCGACGTCGGCCTGGAAGTCGCGCACGAGATCCACAGTTTCTTCGAGGACGAGCACAACCGCACAGTCATCGCGCAACTGCGCGAG CGTGGCGTGGAGTTGCAGGGGGAGGGGGAATTGCATCCGGAGTTCGCCGCATGCGCCACCCTGGCCGGCCTGCTCGACAAGCTGAACATTCCGTTCATCG CCAGCACCGGCGCCCAGCGTCTGGCAGAGCGCTTCGGTAGCCTGGACGCGATCATCGCCGCCGACTGGCTCGATCTGCGCCAGGTCGAACGTCTCACCGA GAAGGCCGCGCGCTCGCTGCGCGATTACTTCGACAAGTCTGCGAACGCCGAGCGCGCCCGGGCCATCGAAGCCCAATTGCGCGAGTTCGGCATGCACTGG GAGAGCGAGAAGAAAGTCGCAGCAGGCCTGCCACTGGCCGGCCAGACCTGGGTGTTGACCGGCACGCTGGAAAGCATGAGCCGCGACGACGCCAAGGCGC GACTCGAAGCTTTGGGGGCGAAGGTGTCCGGCTCGGTATCAGCGAAGACCAGCGTGGTTGTAGCGGGACCGGGTGCCGGCTCGAAGTTGACCAAGGCGAA GGAGCTGGGGCTCACCGTGCTCGACGAAGAAACCTTCCTGCGGCACCTCGGTCAGCTGCAAGCCTAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CGCGGCCGGCAATGCCCGAGTGCGCGTCTTCATCAACGTCCTCCGCGGTGGTGCCGCCGCGGCGCGTTTCGTTCTCGCCTCTTGACATTAAAGAATTCGC CGCCTCGTCCGAAAAGCTGGGCAGGTGGACTCGCGTGTGGCTCCGAGTTCGCCGGTGTCGTACAGGTTGTCTGCGGGGCTTGCAAATTTTTTCAAACGCC TCCTAAAGCTCACCGAAACGACGCCGATAAGCTAATCGAATGCGAACTCAATGGGTGCCTGACATAAGCCGGCCCGGAGTCGCAAGTTCAGGCAACCAAA GTAACTAGCGCCCTTGGAGGCTCATCATGGCTCTTACCGTCAATACCAACGTAGCGTCCCTGAATACTCAGCGGAATCTTAGTAACTCTTCGAGTGCACT CGGGACCTCCATGCAGCGCCTCTCGACCGGTAGCCGCATCAACAGCGCTAAGGATGATGCCGCCGGTCTGCAGATCTCCAACCGTCTGACCAGCCAGGTC
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| Amino Acid Sequence |
>NAD-dependent DNA ligase LigA
MPSAQTAAERIAELRSEIDAHNYRYYVLDEPSVPDAEYDRLFNELKALEAEHPELVTPESPTQRVGGAALAAFGQVRHEVPMLSLGNAFDEQDLLDFDRR VRDGLDLPGGDLFSAGAEVEYSCEPKLDGLAVSLLYENGHLVRGATRGDGSTGEDISANVRTVRNIPLKLHGSGWPSVLEVRGEIYMPKAGFEALNARQV ESGGKPFANPRNAAAGSLRQLDPKITAARPLELCAYGVGRSDGELPDTHVGILNALREWGLPISRELKLAKGVVECRAYYEAIGEKRDALAYEIDGVVFK VNSVAQQRELGFRAREPRWAIAHKFPAREEITELLGVEFQVGRTGAITPVARLKPVQVAGVTVSNATLHNMDEVARLGVMIGDTVIVRRAGDVIPQILGV IVERRPAHARPVHVPERCPVCGSAVERTQLIKRSKGRESVSEGSIYRCVGRLACQAQLKQAIIHFVSRRAMDIDGLGDKIVEQLVDRGLVGSPADLYCLS YEQVVELEGFADLSTRNLLDAIDASRKPTLARFIFALGIPDVGEETAKLLARALGSLDRIACALPDVLVYLPDVGLEVAHEIHSFFEDEHNRTVIAQLRE RGVELQGEGELHPEFAACATLAGLLDKLNIPFIASTGAQRLAERFGSLDAIIAADWLDLRQVERLTEKAARSLRDYFDKSANAERARAIEAQLREFGMHW ESEKKVAAGLPLAGQTWVLTGTLESMSRDDAKARLEALGAKVSGSVSAKTSVVVAGPGAGSKLTKAKELGLTVLDEETFLRHLGQLQA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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