Pseudomonas sp. FeS53a, SZ55_RS05645

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0055085 transmembrane transport
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01786
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0015232 heme transmembrane transporter activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01785
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0022857 transmembrane transporter activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01786
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0019867 outer membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01786
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0015886 heme transport
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01785
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
NCBIfam TIGR01786 JCVI: TonB-dependent hemoglobin/transferrin/lactoferrin family receptor IPR010949 TonB-dependent haemoglobin/transferrin/lactoferrin receptor 41 681 1.7E-105
Gene3D G3DSA:2.40.170.20 - IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily 169 681 1.2E-104
PANTHER PTHR30069 TONB-DEPENDENT OUTER MEMBRANE RECEPTOR IPR039426 TonB-dependent receptor-like 26 678 1.3E-94
NCBIfam TIGR01785 JCVI: TonB-dependent heme/hemoglobin receptor family protein IPR011276 TonB-dependent haem/haemoglobin receptor 40 681 0.0
Pfam PF00593 TonB dependent receptor IPR000531 TonB-dependent receptor-like, beta-barrel 258 678 5.4E-50
MobiDBLite mobidb-lite consensus disorder prediction - - 317 343 -
CDD cd01347 ligand_gated_channel - - 60 681 7.90472E-79
Pfam PF07715 TonB-dependent Receptor Plug Domain IPR012910 TonB-dependent receptor, plug domain 55 158 1.2E-20
Gene3D G3DSA:2.170.130.10 - IPR037066 TonB-dependent receptor, plug domain superfamily 52 168 5.9E-30
SUPERFAMILY SSF56935 Porins - - 43 681 3.53E-103

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.