Pseudomonas helleri DSM 29165, TU84_RS14885
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. DSM 29165 8_307439_25.5786, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AGATCAAGGTGCTGGGTACGGCGTTCAGTGTCAGCGACCGTGGCGGCTGTATTCAGGTGGCGGTGGCCCGCGGCCGGGTGCATGTGCAAGGACTCAAGGG GGAAGCGAAAATCCTCACCGCCGGGCAGCACGTCAGCCTCAATGCCCAAGGCGAGGTGATCGCGCTCAATCCGCACCGCCAGGCCGGGCCTGATGTTGAA AACTGGCGCAAAGGCTGGTGGTCATACACCGATGCGCCGCTGTCCGAAGTGCTCGCTGAGTACAACGCTTACGCAGCCCGCCCTGTGCGGGTCAGCGCCG ACGCCGCGCATTTGCGCCTGACCGGCAGTTTCCCCAGCGATAAACCGCAGATGCTGCTGCAAACGCTGCCGCGAATCCTGCCCGTGCAAGTGGTCAACAA GGCCGGTGAGCTCTATGTGCAATTGCGTTGAATTATTTTTGAGGGGTAAACGCGCCGAGGTCCGTCTTCACCCATAACTACACTCGAGTCAGGACTGACC
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| DNA Sequence for Gene |
>TU84_RS14885
ATGTCGCATTACGCCTCCCCTTACCGCGCCCCACTGAGCCGCCTGGCACTGGCGTGCTCTCTGCTGTTCGGCGCCGGGACCGCTCTGGCGGGCAGCAACA CGCCGCTCAACTTGAACCTGCCCGCACAGCCGCTGGAGGCTGCGGTTCATACCCTGGCCCGTGAAGCGGGCGTCGCCATCGCCGCCGACAGCCAATTGCT CGCCGGGCGCAGTGCACAGCCACTGAATGGTCAGTACACCCTGCACGAAGCCTTACAGCACTTGTTGGACAATACCGGGCTGGTTGCCAGCGAAGAAAAC GGTGTAATCGTGTTGCGCCAGGCACAGATTGACGGCGCCCTGAACCTGGGTGAAACCCGGGTCAACGGTGCCGGCCTGGGCGCCAGTGACTTGCCTGAAG CCTACAGCGGCGGCCAGGTGGCCACCGGTGCCCGGCTGGGGCTGCTGGGCGATACCCAGATCATGGACACGCCGTTCAACATCACCTCATACACCGCGCA AACCATCGAAAACCAGCAAAGCGGCACCGTGGGAGCCGTCCTGCGCAACGACCCGTCGATCCGCTTCAGCACCGGCGAAGGTCACGCGTATGAGAACTTC ATGATCCGTGGTTTTTCCCTCGACTCGGCAGAGCTGGCACTCAATGGCTTGTACGGCATGGCCCCGGACGGCCACGTGCCGACCGAATTTCTGGACCGCG TCGAAGTGCTCAAAGGCCCGGGCGCCCTGCTGTCCGGCATGGCACCCAGCGGTGGCGTGGGCGGCGTGATTAACCTGGTGCCCAAACGCGCCGGGGAAAA ACCGCTGACCCGCCTGACCACAAGCTATGTGTCTGACGGCTATTTTGCCGAGCACCTGGATTTCAGCCGTCGCCTGGGTGACGAACAGCGCTTTGGCATT CGTTTTAACGGCGTGTACGGCGACGGCGACACCGGCGTCGACAAACAGTCCAAGGAACGCACGCTCACCTCGCTGGCCATGGATTATCGTGGCGACGGCT GGAAGCTCGCACTGGACGCTTATGAAACCCACGAGCGCGCCATCAACGGCAGCCCGATGATGGTCGGCTTCAGCGACATTGGCCATGTGCTCAAGGCGCC GAAAGCTGACACCAACATCCTCAAAGGCATCAGCGCCAAGCAGATCAGCAAGGCCGTGATTGTGCGCGGCGAATATGAACTCAACGACGACTGGACAACC TTCGCCAGCGCCGGCAGCTCGAAAAGCCGCTATCAGGGTTTTCTCAACGGCACCCGCCTGCGGGTCAACAATGACAAGGGCGACGCTACCGGCGAAACCT ACAACCAGGCCGGTTATACCGCCAGTACCGCTTACGAGGCCGGTATTCGCGGGCATGTGACCACCGGCCCCATCGACCACAAGCTGGTGTTCACCGCCAG CCTGTTGCACCAGAACATTGGCCGGGCGCCCACCGTGACCGGCGCGCGCTACCCGAGCAACATCTACCACCCTGGCAAGCCGATTATTGCCGGGCACACG GGCTCCAACTCGAAAACCGGTGACAACACTCTCTCCAGCTTTGCCGTTGCCGATACCCTGGCCTTCGCTGATGACAAAGTGCTGCTAACGTTGGGAGCTC GTTCACAACGGGTGCGCCAGCAGATGAGCAAGCCAAAAACCTACGATGAGCAAGCCATCACCCCGGCGGTGGGCCTGGTGATCAAACCCTGGGATGTGCC CGTGTCGTTGTACGCCAACTACATCGAAGGCCTGACCCAGGGCAACACCGTCGGCGACGTGACAGCGGCCAACTACGGCGATCAGTTCGAACCGTATAAA GCCAAGCAAGTGGAAGCCGGTGTGAAATGGGACCTGGGCACGTTCACCCATACGTTGAGTGCGTTCCAGATCGAGAAACCCAGCCTGATCCTCAACAAGA CCAGCAACCTCTACAGCGACGACGGCAAACAACGTAACCGTGGTGTGGAATGGAACATGTTCGGTTCGATCATTCCTTCGGTGCGACTGCTGGGCGGCGT CACTTACACCCACGCCGAGCTGACCCGCACGGCTAACGGCGCGCTGGACGGCAACACCGCACGTGGCGTGCCGAAGTTGTCGGCCAACCTGGGTGCCGAG TGGGACACGCCGTGGGTCGAAGGCCTGACCCTGAACACACTGGTCATTCACAGCAGCTCGCAATACCTGAATGACGCCAACACCCTGAAAATCCCGCAAT GGACCCGTTACGACCTCGGCGCACGTTACAGCACACGCATCCTGAGCAAAGACGTGGTGTTTCGCGCCAGCCTGGAGAACGTTGAAAACCGTTCCTACTG GGCAGGCGTCTTTAACGATGGCTTCGCTACGGTCAGTGAACCGCGCACGCTGAAGCTCTCTACCAGCATCGACTTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GGTGAGCATGAGCCCATTCAATCGCTGGAGCCTTGGTTGCCTGTTTAGCGCCATGGCCTGCGCGTCAGCCCTGGCGGTCGAACCGCTCAGCCAGGGCCAA AGCGTTCGCGCAAGTGTTGCCAAAACCCTGCAGCCCAGCTGGAGCCTGGATCTCAAGGCCGGTGATCTGGTCCAGGGCAAGGTAGTGGGCGATGTCAGCC TGCGCCTGCTTGACGCGCGGGGTAACCCGCTGCGCCTGCTGGTGGATGGCGCGGACATGTCGCGGGACTTTATGTTTGTTGCCCGCGAGGATGGCCAGTA CCTGCTGCGCGCTGAACAGTTGTCGACACGGCCACAGGCCGAGTTCACCCTCACTTTGAGCCAGGTGCTGGCGCTGAGCGAACAACAGCGCGCTCCGACC GCCCTGCTCAGCCCGGCCTTGGGCCAATTGGCAGAGCAACTGAAACAGGGCGCCACCACCCAAGCGTTCTGGAAAGACCGAGAGCAACAGGGCACGCCAC
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| Amino Acid Sequence |
>TonB-dependent receptor
MSHYASPYRAPLSRLALACSLLFGAGTALAGSNTPLNLNLPAQPLEAAVHTLAREAGVAIAADSQLLAGRSAQPLNGQYTLHEALQHLLDNTGLVASEEN GVIVLRQAQIDGALNLGETRVNGAGLGASDLPEAYSGGQVATGARLGLLGDTQIMDTPFNITSYTAQTIENQQSGTVGAVLRNDPSIRFSTGEGHAYENF MIRGFSLDSAELALNGLYGMAPDGHVPTEFLDRVEVLKGPGALLSGMAPSGGVGGVINLVPKRAGEKPLTRLTTSYVSDGYFAEHLDFSRRLGDEQRFGI RFNGVYGDGDTGVDKQSKERTLTSLAMDYRGDGWKLALDAYETHERAINGSPMMVGFSDIGHVLKAPKADTNILKGISAKQISKAVIVRGEYELNDDWTT FASAGSSKSRYQGFLNGTRLRVNNDKGDATGETYNQAGYTASTAYEAGIRGHVTTGPIDHKLVFTASLLHQNIGRAPTVTGARYPSNIYHPGKPIIAGHT GSNSKTGDNTLSSFAVADTLAFADDKVLLTLGARSQRVRQQMSKPKTYDEQAITPAVGLVIKPWDVPVSLYANYIEGLTQGNTVGDVTAANYGDQFEPYK AKQVEAGVKWDLGTFTHTLSAFQIEKPSLILNKTSNLYSDDGKQRNRGVEWNMFGSIIPSVRLLGGVTYTHAELTRTANGALDGNTARGVPKLSANLGAE WDTPWVEGLTLNTLVIHSSSQYLNDANTLKIPQWTRYDLGARYSTRILSKDVVFRASLENVENRSYWAGVFNDGFATVSEPRTLKLSTSIDF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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