Pseudomonas helleri DSM 29165, TU84_RS14885

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Cellular Component GO:0009279 cell outer membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01783
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0038023 signaling receptor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01783
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0019867 outer membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00965
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0015891 siderophore transport
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01783
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0015343 siderophore transmembrane transporter activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01783
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
CDD cd01347 ligand_gated_channel - - 160 792 3.71731E-94
Pfam PF07660 Secretin and TonB N terminus short domain IPR011662 Secretin/TonB, short N-terminal domain 59 107 1.9E-7
Pfam PF00593 TonB dependent receptor IPR000531 TonB-dependent receptor-like, beta-barrel 389 789 3.2E-33
SMART SM00965 STN_2 IPR011662 Secretin/TonB, short N-terminal domain 58 108 1.0E-10
SUPERFAMILY SSF56935 Porins - - 147 792 6.11E-96
PANTHER PTHR32552 FERRICHROME IRON RECEPTOR-RELATED IPR039426 TonB-dependent receptor-like 128 792 4.6E-111
Gene3D G3DSA:3.55.50.30 - - - 36 124 2.2E-21
Gene3D G3DSA:2.40.170.20 - IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily 266 792 2.3E-71
Gene3D G3DSA:2.170.130.10 - IPR037066 TonB-dependent receptor, plug domain superfamily 148 265 3.5E-22
NCBIfam TIGR01783 JCVI: TonB-dependent siderophore receptor IPR010105 TonB-dependent siderophore receptor 156 792 8.3E-107
Pfam PF07715 TonB-dependent Receptor Plug Domain IPR012910 TonB-dependent receptor, plug domain 155 253 1.8E-15

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.