Pseudomonas sp. DSM 28140, TU87_RS12090
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. DSM 28140 5_424213_33.0956, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGACCTGTTGATTTTGGGGTGCGTCATGAGCTGGGTGATTTACAGCGTTTTTGCCCGGGGCCTGGTCAGGGATATCGGTCCGCTGCACACCGTGACCTAT TCCGTGCTCGCGGGCACCCTGATGTTGCTGGCAGCAGCAGTGGCGCAGGGTGAGTTGAGCGCCCACGCGCTGGCCGCCGTCAACAGCACCCAGTGGCTGA GCCTGATTTACCTCGGTGTGCTGGGGTCGGCGCTGGCTTATATCTGGTATTACGACGGCATCCAGAAAATCGGTGTAACCCAATCCGGGGTGTTTATTGC CCTCAATCCATTGTCGGCGGTGGTGCTGGGGATGCTGATTTTGGGGGAGCACCTGAGCATGCCCATGTTGTTGGGCGGTCTGCTGGCCATCAGTGGCATC GTGCTGTGCAATCGTAAGGCCAAAATAACCTGATCAATGGTCAACATTGACGTCCGAAAATGGCGAGAACCGTTAAAAGCCCGGTGCTATTGTGCGGGCC
|
|
| DNA Sequence for Gene |
>TU87_RS12090
ATGAACACACACGACGCCTCACTCACTCCTTCTATTGCCGCGTGCGAAATCGCACGGCTGAGCCGTGATGCGCGCTTTGACGGGGTGTTTTTTACTGCCG TCCTGACCACGCGAATCTATTGCCGCCCGGTATGCCCGGCGCGCGCGCCCAAAGCGTCGAACGTTGTGTATTACCCCAGCGCGGCGGCGGCACAAGCACA GGGGTTTCGCCCTTGCTTGCGCTGTCGGCCCGAGCTGGCACCCGGTAATCAGCTGTGGTTGCAGGGTGAGCATTTAGTGACGCGGGCCTTGAAGCTGATC AACGAAGGGTTTTTGGCGGATAACTCGCTTGAGGCGTTGGCCCTGCGCCTGAATGTGGTGGCGCGTCAGTTACGCCGCGTGTTTGTTAAGTATTTGGGGG CACCGCCGATGGCCGTGCACGCCACTCAACGCCTGTTGTTTGCCAAGCAACTGCTGACAGAAACGCATTTATCGATCACTGAAGTGGCGTTGGCGTCGGG TTTTGGCAGTGTCAGGCGCTTCAATTCAGCGTTTGCCGAAGCCAACCATGCCGAACCACGGGCCTTCAGGCGCAGTCCAAAAACACGCGCTGGCACTGCA CTGGTCCTGCGCTTGGGTTACCGCCCGCCCTACGACTTCAATGCTGTACTCGGATTTTTACAACAGCGCGCCTTGCCCGGTATCGAACAGGTTGACGCGT TCAGTTATCAGCGGGTGTTTGGCCGTGCGCAATCGCCCGGCTGGCTGCGGGTTAGCGCGTGGCCCGCGGGGCAACACGCCCTGCAATTGGAGCTGTTGAA CGTTGCCCCGGCACACATGCTCACTGTGGTGACACGCATTCGGCGTATGTTCGATCTGGACGCCGATCCGCAGGCCATCGCCCATACCCTGGGTGCCAGC CCCCAGTTGGCGCCCCTGATCGAGCGCTATCCGGGCTTGCGTTTACCGGGGGGCTGGGATGGTTTCGAAGTGGCTGTGCGTGCGGTGTTAGGCCAGCAAG TGAGTGTGGCAGCGGCGCGCACCCTGGCCAGCCGCATCGTGCAGCGCTATGGCACACCGATTGAAGTGCCGGGTACATCGGGGCTGGATCGCTTGTTCCC CGACGCTCAGCAATTGGCAGCCGCTAACCTGGACCAAATGGGCATCACCCAGGCACGTATCAATACCCTTCACGGCATTGCTCAGGCGTTGATTGAAGGG CGGGTTGATTTTGGCATGGAGCAAGCGCTCGACACCTTTGTTCAGCGTTGGGTACAACTGCCGGGGATCGGCGAATGGACCGCGCATTACATTGCCATGC GCGTCCTCAAACACCCGGATGCCTTCCCGGCCGCAGACTTGATCCTGCGGCGCGAGGCCAACCCTGATGGCCCGCCGCTGAGCACAAAAGCGATGCAAAC GCTGGCCGAGAGCTGGCGCCCGTGGCGCGCCTACAGCGTCCTGTATTTATGGCGCGCAGCCACCGATGCCGCTGCGCTCAAGAGGATTTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
CCATGTCTCAGATTTACTACGCGCAGATGCCATCGCCGATTGGTCCACTGTTTTTGGTGGCCGACGACGAAGGCTTGCGTGAGGTTCGATTTGAATGCGA GCGCAGAGCACATACCGCTCAAGACAGTTGGCTGCATGCGCCGCAAAAACTGGCTGAGGTCATACGCCAGCTAGAGGCGTACTTTGCGGGCGAGCGATAC ACCTTTGATGTACCGCTTAAACCCGGGGGCACCGAGTTTCAGCAAACGGTATGGCGGGCGCTGACCACCATCCCCTATGCCGTGACCACCAGTTATGGCC AACTGTCGCAGCAGATCCAGCGCCCGACCGCATCACGGGCTGTGGGGGCCGCCAATGGGCGCAACCCGATCCCGATCATCATCCCGTGCCACCGGGTAAT CGGCAGCAATGGCACGTTGACCGGCTTTGCCGGTGGTCTGGCAGCCAAGCAATGGTTGCTGGCGCATGAAGCCAAGTGTCGAGGTTTTGTGCTGTCCTGA
|
|
| Amino Acid Sequence |
>DNA methylase
MNTHDASLTPSIAACEIARLSRDARFDGVFFTAVLTTRIYCRPVCPARAPKASNVVYYPSAAAAQAQGFRPCLRCRPELAPGNQLWLQGEHLVTRALKLI NEGFLADNSLEALALRLNVVARQLRRVFVKYLGAPPMAVHATQRLLFAKQLLTETHLSITEVALASGFGSVRRFNSAFAEANHAEPRAFRRSPKTRAGTA LVLRLGYRPPYDFNAVLGFLQQRALPGIEQVDAFSYQRVFGRAQSPGWLRVSAWPAGQHALQLELLNVAPAHMLTVVTRIRRMFDLDADPQAIAHTLGAS PQLAPLIERYPGLRLPGGWDGFEVAVRAVLGQQVSVAAARTLASRIVQRYGTPIEVPGTSGLDRLFPDAQQLAAANLDQMGITQARINTLHGIAQALIEG RVDFGMEQALDTFVQRWVQLPGIGEWTAHYIAMRVLKHPDAFPAADLILRREANPDGPPLSTKAMQTLAESWRPWRAYSVLYLWRAATDAAALKRI
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|