Pseudomonas sp. DSM 28140, TU87_RS12090

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0043565 sequence-specific DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00342
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00342
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF02805
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0008270 zinc ion binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF02805
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006284 base-excision repair
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd00056
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006281 DNA repair
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF02805
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0008168 methyltransferase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF02805
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00342
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003824 catalytic activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF48150
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:1.10.1670.10 - IPR023170 Helix-hairpin-helix, base-excision DNA repair, C-terminal 439 491 2.2E-10
CDD cd00056 ENDO3c IPR003265 HhH-GPD domain 322 485 1.71755E-19
PANTHER PTHR43003 DNA-3-METHYLADENINE GLYCOSYLASE - - 70 488 1.2E-43
SUPERFAMILY SSF55945 TATA-box binding protein-like - - 202 300 7.69E-24
Pfam PF12833 Helix-turn-helix domain IPR018060 DNA binding HTH domain, AraC-type 113 191 4.2E-17
Gene3D G3DSA:1.10.10.60 - - - 88 199 5.7E-19
Pfam PF02805 Metal binding domain of Ada IPR004026 Ada DNA repair, metal-binding 18 78 6.4E-27
Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein IPR003265 HhH-GPD domain 326 474 3.0E-9
SUPERFAMILY SSF46689 Homeodomain-like IPR009057 Homeobox-like domain superfamily 144 193 2.28E-9
FunFam G3DSA:3.40.10.10:FF:000001 DNA-3-methyladenine glycosylase 2 - - 8 79 1.9E-30
Pfam PF06029 AlkA N-terminal domain IPR010316 DNA-3-methyladenine glycosylase AlkA, N-terminal 202 320 5.5E-33
SUPERFAMILY SSF57884 Ada DNA repair protein, N-terminal domain (N-Ada 10) IPR035451 Ada-like domain superfamily 10 88 7.85E-31
SUPERFAMILY SSF48150 DNA-glycosylase IPR011257 DNA glycosylase 308 486 3.14E-42
SMART SM00478 endo3end IPR003265 HhH-GPD domain 330 488 7.0E-15
Gene3D G3DSA:1.10.340.30 Hypothetical protein; domain 2 - - 321 436 1.7E-29
Gene3D G3DSA:3.30.310.20 - IPR037046 DNA-3-methyladenine glycosylase AlkA, N-terminal domain superfamily 202 320 7.5E-32
Gene3D G3DSA:3.40.10.10 DNA Methylphosphotriester Repair Domain IPR035451 Ada-like domain superfamily 10 79 2.9E-24
SMART SM00342 aracneu4 IPR018060 DNA binding HTH domain, AraC-type 107 190 1.3E-14
SMART SM01009 AlkA_N_2 IPR010316 DNA-3-methyladenine glycosylase AlkA, N-terminal 202 320 4.7E-47

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.