Pseudomonas sp. CB1, TD31_RS13490
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Molecular Function | GO:0003677 | DNA binding |
Inferred from Sequence Model
Term mapped from: InterPro:PF00440
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Classifications Manually Assigned by PseudoCAP
|
|
Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| PANTHER | PTHR30055 | HTH-TYPE TRANSCRIPTIONAL REGULATOR RUTR | - | - | 27 | 235 | 3.0E-9 |
| SUPERFAMILY | SSF46689 | Homeodomain-like | IPR009057 | Homeobox-like domain superfamily | 27 | 108 | 5.13E-16 |
| Pfam | PF00440 | Bacterial regulatory proteins, tetR family | IPR001647 | DNA-binding HTH domain, TetR-type | 40 | 84 | 2.4E-6 |
| Gene3D | G3DSA:1.10.357.10 | Tetracycline Repressor, domain 2 | - | - | 35 | 241 | 4.2E-74 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.