Pseudomonas sp. C5pp, RR51_RS19570

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas sp. C5pp Contig25, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
ACGCCGTCAAGCCCGGCGTGTTCGACCTGGACGACATCGACCACTTCAGCACCCGCGCGGTGAGCTTCTTCCTCGGCCTGCCGGGCCCGCGTCATCCGAA GCAGGCCTTCGACGTGATGGTGGCTGCGGCGCGCAAGCTGGCGCACGAACTGAACGGTGAGCTCAAGGACGACCAGCGCAGCGTGCTGACCGCCCAGACC ATCGAGCACTATCGCCAGCGCATCGTCGAGTTCGAGCGCCGTGCGCTGACCCAGAAGCGCTGACAGATCCAGACGAAAGAGCAGCCTCAGGGCGTGCTGG TCGGTTCGGGTGTTGTTATCGCCTGTTCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGGGACACCACAGCCCTTGAGGTTTGTGGTGTCCCTGTAGGA GCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAATAAATACCTCAAACCCCCGGCACCACCCCAGGCTGCTCTTTTGCTTTGCAAGAGAAGACAGATCCC
DNA Sequence for Gene
>RR51_RS19570
ATGACCGCCGAAACCCGTATCCACGAACTGCGTGCCGAGCTCGACCAGCACAACTACCGCTACTACGTGCTCGATGAGCCAAGCGTGCCCGATGCCGAAT ACGACCGCCTGTTCAACGAGCTCAAGGCGCTTGAAGCCGAATACCCGCACCTGGTAACCCCTGACTCGCCCACCCAGCGTGTCGGTGGCGCAGCCCTGGC CGCGTTCAGCCAGGTCCGCCACGAAGTGCCCATGCTCAGCCTCGGCAACGCGTTTGAAGAAGCCGACCTGCGTGAGTTCGGCCGCCGCGTGGTAGACGGC CTCGACCAGCCCGGTGCGGTCGACTACAGCTGCGAGCCCAAGCTTGACGGCCTGGCCGTGAGCTTGCTGTACCGCGACGGTCTGCTCGTACAGGGCGCCA CCCGTGGCGACGGCACCACCGGCGAAGACATCAGTGCCAACGTACGCACCGTGCGCAACATCCCGCTCAGGCTGCAAGGCGAGGGATGGCCTGCGGTGCT GGAGGTGCGCGGCGAGGTGTACATGAGCAAGGCCGGTTTCGACCGTCTCAACGCCGCCCAGGCTGAAGCCGGCGGCAAGACCTTCGCCAACCCGCGCAAC GCCGCCGCCGGCAGCCTGCGTCAGCTGGACCCGAAAATCACCGCCAGCCGCCCGTTGGAGTTCTGCTGCTATGGCGTCGGCCAGGTGTCCGCGAGCATCG GCGACAGCCACATCGGCATCCTCGAACAGCTCAAGGCCTGGGGGCTGCCGATCAGCCGCGAACTCAGGCATGCCGCCGGCATCGAAGAATGCCTGGCCTA CTACCGCGACATCGGCGAGCGACGCAACAGCCTGCCCTACGAAATCGACGGCGTAGTGTTCAAGGTCAACAGCCTGGCCGCCCAGCGTGAACTGGGCTTC CGCGCCCGTGAGCCGCGCTGGGCGATTGCCCACAAGTTCCCGGCCATGGAGGAGCTGACCGAGGTGCTGGATGTCGAGTTTCAGGTCGGCCGCACCGGCG CGGTAACGCCCGTGGCACGCCTGAAACCGGTCAAGGTGGCCGGTGTGACCGTGTCCAACGCTACCCTGCACAACATGGACGAAATCGCCCGCCTGGGCCT GCGCGTTGGCGACACGGTGATCATCCGCCGCGCCGGTGACGTGATTCCGCAGGTGATGCAGGTGGTGCTGGAGCGCCGCCCGGAAGATGCGCGCCCGGTG CAGGTGCCGAGTGAGTGCCCGGTATGCGGCTCGCAGGTCGAGCGTACCCAGTTGGTCAAGCGTAGCAAGGGCAAGGAAACCACCAGCGAGGGGGCGGTGT ACCGCTGCGTCGGTCGCCTGGCCTGTGGCGCCCAGCTCAAGCAGGCAATCATCCACTACGTGTCGCGCCGCGCCATGGACATCGAAGGCCTGGGCGAGAA GAGCGTCGAGCAACTGGTGGACGAAGGCCTGATCGGCTCGCCGGCCGACCTGTACAAGCTGGAATTCGACCAGATCGTCGGCCTGGAAGGCTTTGCCGAA GTGTCCAGCAAGAAGCTGCTGGATGCCATCGAAGCCAGCAAGCGCCCGGGCCTGGCGCGCTTCATCTACGCCCTGGGTATCCCGGACGTAGGCGAGGAGA CGGCCAAGGTGCTGGCCCGTTCGCTGGGCAGCCTGGCGCGCGTGCAGCAAGCGCTGCCGCAAGTGCTCACCTACCTGCCGGACATCGGCCTGGAGGTGGC GTACGAGATCCACAACTTCTTCGAGGACGAGCACAACCGCAAGGTCATCAAGCAGTTGCTCGACAGCGGCATGCAACTGCAGGACGAAGGCGAGCTGGCT GCCGAGTTCGCCGCCAGCACCACCCTGGCCGGCATGATCGCCAAGCTCGACATCGCCTCGGTTGGCCCGACCGGTGCCGAGAAGCTGGTTGCCAAGCTAG ACAGCCTGGACAAGATCATCGCCGCCGACGGTATCGACCTGCGCCAGGCCCTGGCGGCCAAGCAGGCCGAAGCCGTGCGCGAGTTCTTCAAGGATGAAGC CAACCAGAAGCTGGCCCGGGACATCGAGGCACAGTTGCTGGCGTTCGGCATGCACTGGAGCAGCGAGAAGAAAGTGGCCGAAGGCTTGCCGCTGGCCGGC CAGACCTGGGTGCTGACCGGCACCCTGGAGCGCATGAGCCGCGACATCGCCAAGGAAAAGCTGGAAAGCCTGGGGGCCAAGGTGGCCGGTTCGGTTTCCG GCAAGACCCACTGCGTGGTGGCGGGGCCGGGGGCGGGGTCCAAGCTGGCCAAGGCCAGTGAGTTGGGGGTGAAGGTGCTTGATGAAGATGCCTTCGTCAC TTTCCTGGGCGAACAGGGCATCGCTGTCTAA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
CGCCCTGCGCAATCCCCTGTGGCTTGCGCGGTCCTTGTGGGAGCGGGCATGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCGTTACCTGCTTCG CGGCGGTTCGACGCCTCGACACGCCCGCTCCCACAAGTCCTGCGCTGGTCTTGCTGTCAGCGTTAACCCTGTAGGAGCGGATTCACCCGCGAATTGGCAG CCCCAGACCACCCGGCCCGGACAAGTCATTGAGAAATGATGACTTTTTCTCCTCCAGAGGTTGTATCTGCCCCCAAGACCGGTACAATGGCGCCACTCGC TGTTCAGCGAGCCTTGTAGTGGTGGCCCCATCGGTCCCCCCGCATTGATTACCCGTTAACCTGGTCAGGCCCGGAAGGGAGCAGCCATAGCGGGAACATC GAGTGCCGGGGTGTGGCTGGTGGGGCCGCCTCCATTTCAGGTCCTTGAATTCTCAAGGATTTCTCGCATTACCCAACTTCGCTCTGGTTTGGCCGCCAGT
Amino Acid Sequence
>NAD-dependent DNA ligase LigA
MTAETRIHELRAELDQHNYRYYVLDEPSVPDAEYDRLFNELKALEAEYPHLVTPDSPTQRVGGAALAAFSQVRHEVPMLSLGNAFEEADLREFGRRVVDG LDQPGAVDYSCEPKLDGLAVSLLYRDGLLVQGATRGDGTTGEDISANVRTVRNIPLRLQGEGWPAVLEVRGEVYMSKAGFDRLNAAQAEAGGKTFANPRN AAAGSLRQLDPKITASRPLEFCCYGVGQVSASIGDSHIGILEQLKAWGLPISRELRHAAGIEECLAYYRDIGERRNSLPYEIDGVVFKVNSLAAQRELGF RAREPRWAIAHKFPAMEELTEVLDVEFQVGRTGAVTPVARLKPVKVAGVTVSNATLHNMDEIARLGLRVGDTVIIRRAGDVIPQVMQVVLERRPEDARPV QVPSECPVCGSQVERTQLVKRSKGKETTSEGAVYRCVGRLACGAQLKQAIIHYVSRRAMDIEGLGEKSVEQLVDEGLIGSPADLYKLEFDQIVGLEGFAE VSSKKLLDAIEASKRPGLARFIYALGIPDVGEETAKVLARSLGSLARVQQALPQVLTYLPDIGLEVAYEIHNFFEDEHNRKVIKQLLDSGMQLQDEGELA AEFAASTTLAGMIAKLDIASVGPTGAEKLVAKLDSLDKIIAADGIDLRQALAAKQAEAVREFFKDEANQKLARDIEAQLLAFGMHWSSEKKVAEGLPLAG QTWVLTGTLERMSRDIAKEKLESLGAKVAGSVSGKTHCVVAGPGAGSKLAKASELGVKVLDEDAFVTFLGEQGIAV
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site