Pseudomonas sp. C5pp, RR51_RS19570

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00278
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003911 DNA ligase (NAD+) activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF001604
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006281 DNA repair
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF001604
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006260 DNA replication
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF001604
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
NCBIfam TIGR00575 JCVI: DNA ligase (NAD(+)) LigA IPR001679 NAD-dependent DNA ligase 10 604 0.0
Pfam PF00533 BRCA1 C Terminus (BRCT) domain IPR001357 BRCT domain 695 763 1.4E-10
PIRSF PIRSF001604 LigA IPR001679 NAD-dependent DNA ligase 1 612 0.0
SUPERFAMILY SSF50249 Nucleic acid-binding proteins IPR012340 Nucleic acid-binding, OB-fold 317 398 1.23E-28
Gene3D G3DSA:1.10.287.610 Helix hairpin bin - - 1 64 8.4E-29
Gene3D G3DSA:3.40.50.10190 BRCT domain IPR036420 BRCT domain superfamily 686 770 7.6E-24
SMART SM00278 HhH1_4 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 456 475 1.4
CDD cd00114 LIGANc IPR013839 NAD-dependent DNA ligase, adenylation 5 315 0.0
Gene3D G3DSA:1.10.150.20 - - - 515 595 6.5E-24
Pfam PF01653 NAD-dependent DNA ligase adenylation domain IPR013839 NAD-dependent DNA ligase, adenylation 2 315 1.3E-129
Gene3D G3DSA:6.20.10.30 - - - 389 439 7.7E-14
SMART SM00532 ligaN3 IPR013840 NAD-dependent DNA ligase, N-terminal 2 458 0.0
SMART SM00292 BRCT_7 IPR001357 BRCT domain 695 772 3.2E-9
FunFam G3DSA:1.10.150.20:FF:000007 DNA ligase - - 440 514 6.6E-28
Gene3D G3DSA:3.30.470.30 DNA ligase/mRNA capping enzyme - - 65 313 1.8E-101
Pfam PF14520 Helix-hairpin-helix domain - - 456 509 0.0021
SUPERFAMILY SSF47781 RuvA domain 2-like IPR010994 RuvA domain 2-like 601 686 1.07E-9
PANTHER PTHR23389 CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 - - 16 748 6.0E-47
PIRSF PIRSF001604 LigA IPR001679 NAD-dependent DNA ligase 602 773 8.4E-33
SMART SM00278 HhH1_4 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 490 509 820.0
Pfam PF03120 NAD-dependent DNA ligase OB-fold domain IPR004150 NAD-dependent DNA ligase, OB-fold 320 396 3.0E-35
Gene3D G3DSA:2.40.50.140 - IPR012340 Nucleic acid-binding, OB-fold 315 388 1.5E-33
SUPERFAMILY SSF52113 BRCT domain IPR036420 BRCT domain superfamily 696 770 3.92E-17
SUPERFAMILY SSF56091 DNA ligase/mRNA capping enzyme, catalytic domain - - 2 314 1.08E-120
Gene3D G3DSA:1.10.150.20 - - - 608 685 2.0E-7
Hamap MF_01588 DNA ligase [ligA]. IPR001679 NAD-dependent DNA ligase 1 769 52.681862
Gene3D G3DSA:1.10.150.20 - - - 440 514 3.0E-27
FunFam G3DSA:1.10.150.20:FF:000006 DNA ligase - - 515 593 3.8E-23
FunFam G3DSA:1.10.287.610:FF:000002 DNA ligase - - 1 63 8.8E-29
SMART SM00278 HhH1_4 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 522 541 140.0
Pfam PF12826 Helix-hairpin-helix motif IPR041663 DisA/LigA, helix-hairpin-helix motif 520 583 3.0E-19
FunFam G3DSA:3.30.470.30:FF:000001 DNA ligase - - 64 313 6.0E-110
CDD cd17748 BRCT_DNA_ligase_like - - 698 765 5.48241E-24
Pfam PF03119 NAD-dependent DNA ligase C4 zinc finger domain IPR004149 Zinc-finger, NAD-dependent DNA ligase C4-type 405 444 3.5E-10
FunFam G3DSA:2.40.50.140:FF:000012 DNA ligase - - 315 388 1.3E-34
SUPERFAMILY SSF47781 RuvA domain 2-like IPR010994 RuvA domain 2-like 402 593 1.0E-50

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.