Pseudomonas sp. 21, UB43_RS26010

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0005515 protein binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF08447
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 560 690 1.3E-8
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 681 822 4.19E-16
SMART SM00091 pas_2 IPR000014 PAS domain 832 899 7.4E-8
Gene3D G3DSA:3.20.20.450 EAL domain IPR035919 EAL domain superfamily 1132 1388 9.1E-106
Gene3D G3DSA:3.30.450.20 PAS domain - - 261 390 6.1E-8
SMART SM00091 pas_2 IPR000014 PAS domain 563 632 1.3E-4
SUPERFAMILY SSF55073 Nucleotide cyclase IPR029787 Nucleotide cyclase 962 1123 1.1E-52
Gene3D G3DSA:3.30.70.270 - IPR043128 Reverse transcriptase/Diguanylate cyclase domain 959 1128 2.6E-65
CDD cd01949 GGDEF IPR000160 GGDEF domain 958 1120 2.13713E-64
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 692 830 5.1E-12
SMART SM00086 pac_2 IPR001610 PAC motif 641 684 9.1E-6
CDD cd00130 PAS IPR000014 PAS domain 585 681 2.47099E-6
Gene3D G3DSA:3.30.450.20 PAS domain - - 695 832 6.8E-22
SMART SM00091 pas_2 IPR000014 PAS domain 696 763 0.0013
SMART SM00052 duf2_2 IPR001633 EAL domain 1132 1378 1.5E-123
Gene3D G3DSA:3.30.450.20 PAS domain - - 393 556 5.9E-5
Pfam PF13426 PAS domain IPR000014 PAS domain 844 945 1.5E-15
SUPERFAMILY SSF141868 EAL domain-like IPR035919 EAL domain superfamily 1137 1385 1.29E-92
SMART SM00091 pas_2 IPR000014 PAS domain 272 337 0.26
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 835 952 3.3E-18
CDD cd00130 PAS IPR000014 PAS domain 841 943 5.97281E-9
PANTHER PTHR44757 DIGUANYLATE CYCLASE DGCP - - 828 1387 0.0
FunFam G3DSA:3.30.70.270:FF:000001 Diguanylate cyclase domain protein - - 952 1124 5.2E-47
Gene3D G3DSA:3.30.450.20 PAS domain - - 557 682 1.5E-18
Pfam PF00990 Diguanylate cyclase, GGDEF domain IPR000160 GGDEF domain 957 1118 1.2E-53
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 457 558 5.71E-5
NCBIfam TIGR00254 JCVI: diguanylate cyclase (GGDEF) domain IPR000160 GGDEF domain 954 1120 1.5E-43
Gene3D G3DSA:3.30.450.20 PAS domain - - 833 958 5.3E-32
SMART SM00086 pac_2 IPR001610 PAC motif 904 946 4.6E-5
CDD cd00130 PAS IPR000014 PAS domain 705 821 4.53364E-5
FunFam G3DSA:3.20.20.450:FF:000001 Cyclic di-GMP phosphodiesterase yahA - - 1133 1388 1.1E-102
Pfam PF13426 PAS domain IPR000014 PAS domain 712 823 1.9E-7
Pfam PF08447 PAS fold IPR013655 PAS fold-3 587 678 2.4E-14
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 548 682 4.99E-17
Pfam PF00563 EAL domain IPR001633 EAL domain 1138 1373 2.3E-77
SMART SM00267 duf1_3 IPR000160 GGDEF domain 946 1122 3.3E-73
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 839 946 9.34E-22
CDD cd01948 EAL IPR001633 EAL domain 1138 1378 1.18968E-110
SMART SM00086 pac_2 IPR001610 PAC motif 782 824 6.2E-4
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 265 390 2.9E-6

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.