Pseudomonas sp. 20_BN, BN1079_RS10450
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. 20_BN genome assembly PRJEB6478_assembly_1,contig CONTIG000001, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GGCCGCTTCGCCCAACACAGCAACGGCGTACTCAGCCGCCTGGAGCCGCAAGGGCTTGAGGACCATCCTCTGCCGGGCCCATCGGGGCGTGGCGCAATTC TGCTCAAGTTCGGCGAGGGCGAAGATGCCCTGGTGGTGGTGGTCATGCATCTCGCGCTGGGCGGTGGTACCCGGAGCCGTCAGTTGGCCTATATCAGAGA GCTGATTGGCGGCTACCGTCACCAGGTGCTGATGGGCGACATGAACACCCATGCCACCGATCTGTTGGAAAACTCGCCCCTGCGAGACCTTGGCCTGCAG GCACCGCAGATCGCCGCAACCTTTCCCAGCTGGCGCCCGCAGCGCTGCCTGGACCATATCCTGTTGAGCCCGAGCCTGACGCTCGAGCGTGTCGATGTGC TGTCCCATGCGATATCCGATCACCTGCCGGTGGCAGTGGAGATTCGCCTGCCCGACTCGCTGCGCGGCGATACCTTCCCGGTCCCTCTGGACAAGGCGCA
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| DNA Sequence for Gene |
>BN1079_RS10450
ATGAACGAAGAAGCGTCGCGCTGGCGGGAAAAGTACCTGCAATCGCTGGAACAGCAGGAACAACAGGAAGCCCTTTGGAACACCCGTCTCGATCTGTTGC GTCGCAGCTTGGTGCGCAGCAGTTTTGCGGTCGAGGGCGCCGACCCTGTGGTCGAAAAGTGCATGCGCGACTTGCGCGATGTGCTGCGCGACGAGGATCT GGATCACGGCCTGGCGGAGCTGGTGCCGCGCCTTGAGCGTGCCGTACTGGATACCGAGCGCAACAAGCAGGAACGCATTGAGCGTCTGGCGCTTGGCTTG CAGCGGCTGACCACGCAGTTGCTGGCCCTGCCATTGCCCAGCGAAGTGCGTAAACCACTGAAGATCTATGCACGCAAGATCCGCAAAGGTGCGTTGCAAC CGCGCGATCTGCCGGCCCTTTTGGGCGAGCTGGCCGGATTGCAGGACCGCGCGCTGACCCTGCAACTGGCGGATCAGCCGCGCAATTTGAGCCTGTTCAG CCGGCTCTTTGGCCAGCGTGATATGGCCGCTGCCAGCGTCGTGGCCGAACAGGGGGCGGCCGTTGCACCCGAGGCAGTAGCTGCCGATGCCCAGCTTGAA CCGGAAGCAACGGAAGCAGTGGAATTTGCTGCGCCGCAGCCTGTGGCGCAGCTCGTCGGAGAAGCACCTTCGGACGCTCCCGAGGCGCTCGATCGCTACG AACCCATTGCCTTGCCGATGGTTGCTGACCCTGACGAGCTGCCGGAGCCCACGGAAGAGGTGAGCTCGGAAGCGGATGGGTTGGTCGGCACCGGCGAGGC GCAAGGTTATGTTTTGCCCGCCACACCGGAGCAGGCCTACAGCGCCATCGCCGAACGTGTGGAGGCGATGCTGTTCGGTCTGCTCGACGATCTGCAGCAG TGCGAGGCGCAGCGGGAACAGGCGCAAGCCCTGCGCGAGCGAATCCAGCGAGGTCTGAACTGGTACGAGCTGGTACCGCTGCTGGACGACCTGGCGCAGC TGATGATCGCCGTGGCCAACCAGAGCCAACGCGAGTTTGAAAACTATCTGCAATTGCTCAACGAGCGCCTGGCGGGCATGCAGGAAAGTCTCGGGGCGAC GCATGACGGCCATGCACGCAGCCGGGAGGCTGCACAGGCGCTGGATGAAGAGTTGCGCCAGCAGGTCGGGGGGTTGCAGAGCAGCGTGCTTCAGGCTGAG GATCTGCCCAGCCTCAAGCAGGGCGTACAGGCGCGGCTGGACGCTTTGCTGGCAACCGTCGACGTCTATGAGCGCCAGCGCAGTGTGCATGAAAAGCAGC TGGCTGAGCGCCTCAATACTCTGGTCGAGCGGGTCGCGAATCTTGAACAGGCTGCCACTGGCTTGCGCCTTCACCTCGCCGAGCAGCGCAAGAAAGCCCT GCATGATCCGCTCACCGACCTGCCCAATCGTGCGGCCTGGGATGAGCGCCTGGAAATGGAAGTCGCCCGCCAGCAGCGCTACGGCGGGCAACTGCTGTTG GCAGTCCTGGATGTCGATCATTTCAAGCGCATCAATGACAGCTTCGGCCATCTGGCTGGTGATCGGGTGCTGAAGATCATCGCCAACGAGCTGCGCAAGC GCTTGCGCAAGACCGATTTCATCGCCCGTTTCGGCGGCGAGGAGTTCGCCTTGCTGCTGCCCGAAACGCCGCTTGAGGCTGGTCAGCAACTGCTCGAAAG CCTGCGCCAGGGCATTCAGAACTGCCCGTTTCACTTCAAGGGCGAACGCATTGACGTGACCCTGTCTGGCGGCCTTGCCGCCTTCGCCGAGGCGGAGCGT GCGGAGCATGTGTTCGAGCGTGCCGACCGCGCGCTCTACCGGGCCAAGGGTGCCGGGCGTAACCGTATCGAGATAGCTTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TAATGATGAAAAGAGTCTTGGCCTTGGGCCTGTGCATGTTGCTGGCCGGCTGCGCCAGTGGCCCTCGAATCGACACGCGACATACCTCTGTGGGCCATGA CAGCCGTGTGCAGTTCATTGTGCTGCACTACACCTCGAGTGACCTGGAGCGCTCGCTGGATATCCTCAAGGGCGATGGCGTCAGCAGCCACTATCTGATC GGCGAGTCGCCGGCGACCATCTACCAGCTGGTGGACGAGAACCGCCGGGCCTGGCATGCCGGCGACAGCCAGTGGCGGGGCCGGACCTGGCTCAATTCCA GTTCGATTGGTATCGAGCTGGTCAATCGAGGCTATATCGAGGGGGAGCAGGGCCGGCTCTGGTATCCCTATTCCGATGCGCAGATCGATGCGCTGATCGT GCTGCTCAAGGACATCATGCAGCGCCACGGGCTAAAGCCCGGCGCCATCATCGGGCACAGCGACATCGCTCCGCAGCGCAAGGTCGATCCTGGTCCCCTG
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| Amino Acid Sequence |
>diguanylate cyclase
MNEEASRWREKYLQSLEQQEQQEALWNTRLDLLRRSLVRSSFAVEGADPVVEKCMRDLRDVLRDEDLDHGLAELVPRLERAVLDTERNKQERIERLALGL QRLTTQLLALPLPSEVRKPLKIYARKIRKGALQPRDLPALLGELAGLQDRALTLQLADQPRNLSLFSRLFGQRDMAAASVVAEQGAAVAPEAVAADAQLE PEATEAVEFAAPQPVAQLVGEAPSDAPEALDRYEPIALPMVADPDELPEPTEEVSSEADGLVGTGEAQGYVLPATPEQAYSAIAERVEAMLFGLLDDLQQ CEAQREQAQALRERIQRGLNWYELVPLLDDLAQLMIAVANQSQREFENYLQLLNERLAGMQESLGATHDGHARSREAAQALDEELRQQVGGLQSSVLQAE DLPSLKQGVQARLDALLATVDVYERQRSVHEKQLAERLNTLVERVANLEQAATGLRLHLAEQRKKALHDPLTDLPNRAAWDERLEMEVARQQRYGGQLLL AVLDVDHFKRINDSFGHLAGDRVLKIIANELRKRLRKTDFIARFGGEEFALLLPETPLEAGQQLLESLRQGIQNCPFHFKGERIDVTLSGGLAAFAEAER AEHVFERADRALYRAKGAGRNRIEIA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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