Pseudomonas sp. 12M76_air, VG99_RS12190
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|
Functional Classifications Manually Assigned by PseudoCAP
|
|
Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| CDD | cd01948 | EAL | IPR001633 | EAL domain | 427 | 667 | 5.31457E-119 |
| Coils | Coil | Coil | - | - | 225 | 245 | - |
| Pfam | PF00563 | EAL domain | IPR001633 | EAL domain | 427 | 662 | 6.1E-79 |
| PANTHER | PTHR44757 | DIGUANYLATE CYCLASE DGCP | - | - | 238 | 666 | 0.0 |
| SMART | SM00267 | duf1_3 | IPR000160 | GGDEF domain | 239 | 411 | 7.7E-51 |
| Gene3D | G3DSA:3.20.20.450 | EAL domain | IPR035919 | EAL domain superfamily | 421 | 681 | 3.7E-105 |
| SMART | SM00052 | duf2_2 | IPR001633 | EAL domain | 421 | 667 | 5.2E-125 |
| Gene3D | G3DSA:3.30.70.270 | - | IPR043128 | Reverse transcriptase/Diguanylate cyclase domain | 239 | 413 | 2.8E-48 |
| SUPERFAMILY | SSF141868 | EAL domain-like | IPR035919 | EAL domain superfamily | 428 | 675 | 2.09E-94 |
| FunFam | G3DSA:3.20.20.450:FF:000001 | Cyclic di-GMP phosphodiesterase yahA | - | - | 422 | 677 | 5.1E-100 |
| CDD | cd01949 | GGDEF | IPR000160 | GGDEF domain | 251 | 409 | 9.21133E-50 |
| NCBIfam | TIGR00254 | JCVI: diguanylate cyclase (GGDEF) domain | IPR000160 | GGDEF domain | 246 | 409 | 1.6E-32 |
| Pfam | PF00990 | Diguanylate cyclase, GGDEF domain | IPR000160 | GGDEF domain | 250 | 407 | 1.4E-40 |
| Coils | Coil | Coil | - | - | 672 | 682 | - |
| SUPERFAMILY | SSF55073 | Nucleotide cyclase | IPR029787 | Nucleotide cyclase | 255 | 411 | 2.12E-40 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.