Pseudomonas sp. 11/12A, GQ39_RS24580
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. 11/12A GQ39DRAFT_scf7180000000022_quiver_dupTrim_8682.1_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CCCATTAACTGCTCGATGCGATGACGCATCTCGGCAGCGGCCTTGTTGGTAAAGGTCACCGACAGAATGGAGTGAGGCGATGCGTTTTCGACCTGGATCA ACCAGGCGATACGGTGCACCAGCACTCGGGTTTTACCGGAACCAGCACCGGCCAGGACCAACTGACGACCCACGGGGGCTGCTACGGCCTGCCGTTGGGC ATCGTTGAGGGAGTTCAGCAGAAGGGAGAGATCATCGCGCATCGGGGCATTCTAGGGGGCTGCGTCACACCGGGCAAACCCCGCTTTGTTTTAGCCGATG AAAGAGGCGCGCGTGACGACCGGTCAGTCATTGTCCGCAGGCGCTGGCCGGCCTTGCCCAGCGGCTTTTACTCCCGAGACGGGTGGTCGTACTTTTGACT GTTTTTTAACCTGTAGCTGTTTGGTCCGGGCATTTGCTTGTGTATGCTCCGTTCACGTTTCGAGCCTGTGCTCGTCATTATAAGAACAAGAATATTGCCT
|
|
| DNA Sequence for Gene |
>GQ39_RS24580
ATGATCTTCAGCTCCCACCTGTCGGGCCCCACAGTGGAGCCTCGGGTTATCCGTAAACAATACGCTATGGAAATGGCGGTCGAACGCACGCGTCTGCTTT ATCAGGGCTCTTTGCTGCCGACATTGTTCATGTTGATCAATGGTCTGGTCTGCGCCGGGTTGCTCTGGAGCCCGCAGCGGTACTTCCTGGTCAGTGTCTG GATGGTGTGGTTGCTGTCCCTGGTGGCCTTGCGCGTGATTCAGGTCGCCGCCTTCGATTCGGCGATTCCCAACCGTCAGGCGCATCCCGTCTGGCGACGC ATGTTTTTGCTGGGCTCCGGTCTGACTGGCTTGACCCTCGCTGGCGCGGGCATCGCGCTGGTTCCCGCCGATAACTTCATCCAGCAGGCCTGGGTTTTCG GTCTGATCGGCGCCGCGGCACTCTCAGCCAGTGTGGCCTATGCGGTCAGCCTGCCGGGGTTCCTGTCGTTCACTTTGCCCTGTTTGTTGCCGGCCATCGC CTATCTGTTCTGGGGCGGCGATGAGCAGGCGCAAGGCTGGGGCTGGTTCGGCCTGATTTTGTTGGGCGCCCTGAGCGTGGTGGCCTGGCAGGTCAACCGC CTGATCGATCGAGAGTTATTGCGACGCTTCCAGAATCAAGCGTTGATCGAGCATTTGCAGCAGGCGCAAAACTGCAGCGACCAGCTCAATCAAAAGCTGG CCAGCGAAGTTGAGCAGCGCCGTCGCGCCGAAAACGAACTGCGTGAAATTCAGGCCGGCCTGGAAAGCCGTGTTGCACAACGCAGCCTTGAGCTGGACGC TGCCAACCAGGCGCTGAGCAAGAGTGAGGCGCGACTGGCCCTGGCATTGGAGGCCAGTGAGCTGGGTCTATGGGACTGGAACCTGCAAACCGATGAGGTC CATCACACCCAGATTCAGGAGCTGTTCGGCCTGGAGCCAGAATACGTGACGGCCATGCTGCGTCATCTCAAGCCACGCCTGCATCCCGACGATCTTCCTG CGCTGAGAAAGGCGTTGGTCGAACATTTGAAGGGGCGGACCGAGGATTACCAGATCGAATACCGGGTGCGTCATGCCGACGGCCACTGGGTGTGGATCGA AGATCGCGGGCGAGCGGTGGAACGCGCTGAAAACGGCCGGGTGATCCGCATGGTCGGCACCCGTCGCGACATCAGCGCCAGCAAGGCGCTCGAAGAGCAG CAGCAACTGGCGGCGACGGTGTTTGAGGCGGCCAGCGAGGGCATTGTGATTTTTGATCCGAATTACGCCCTGATCGCCATCAATCAGGCCTTCAGCCGCG TGACTGGCTATGAGATCGAAGACATGCTGGGGCGCAACGTCGTCGAGTTGCCCTGCAGTCGCGATGCGCGCCGACACTACGGAGCGATTCACCAGGCGCT GGAGCAATACGGCAGCTGGCAGGGTGAACTGGTGGAAACCCGCAAGAACGGTGAGATGTACCCGCAATGGCTGCAATTGAGCACTGTGCGCGATACTCGG GGAAAGGTAAGCCATATTGTCGGCTTCTTCTCCGATCTCTCGGCGCGGCGAGAATCCGAAGAGCGCATGCGCTATCTAACCCATTACGACGAACTGACGG GCCTGGCCAACCGGGCGATGTTCCGCGAACGGCTCAGCGAAGCGCATCAGCGAGTGCGCCAGGGCGGCTATCGCAGCCTGGCACTGCTGCATATCAATCT GGATCGCTTCAAACAGCTCAACGATAGTCTTGGCCACGAAGTCGCCGATCAGTTGCTGCAGAAAATGGCTCGGCGGTTGGTCAACGCGCTGCCCGAGGCG GACACCATTGCGCGTTTGTCGGGCGACGAGTTTGCCGTGTTATTCAATTCCTACGGCAACCTCTCGAGCCTGGCGCGGGTAGCGACGCGCTTGTCGAATA AGTTGCGTTTGCCGTTGACCATCGATGGCCATGAACTGGTGGTCAGCTCATCCATGGGGATCAGCCTGTTGCCGGACAACGCCCGGGAGATTTCCGCGCT GGTCAGCCAGTCGAACATGGCCATGCAACATGCCAAACATCTGGGCGGCAATAATTTCCAGTTCTACACCGACAGCCTGCAAGCCAGCACGCTGGAGCGC TTGCAGCTGGAAAACCAGCTGCGCAAAGCCATCGATGAGAATCAGTTGATGGTGTTCTACCAGCCGAAGCTGTGTCTTGCCACGGGCAAGCTGAATGCTG CCGAGGCCTTGGTGCGCTGGGACCACCCGACCATGGGCCGCGTGCCGCCGGGAGACTTCATCGGGCTGGCGGAAGAAACCGGGCTGATCGGCCCAATTGG CGAGTTCGTGTTGCGTCAGGCCTGCTGGCAGGCCTGTGAGTGGCAGCGACAGGGGCTTGAGCCGATTCGGGTGTCGGTCAATCTGTCGGTGTATCAACTG CGTCAGGGCAAACTGGTCAGCCTGGTTCGGCAGGTGCTGGAGGAAACCGGTCTGGCGCCGCATTACCTGGAGCTGGAGCTCACCGAAAGCCAGTTGCTGG ACAGCGTCGAGCACATCATCGCGAATTTCCAGCAGCTGCGTGATTTGGGCGTGAAGCTGGCGATCGATGATTTCGGTACCGGCTATTCGTCACTGAGCTA TCTCAAGCGCATCCCGGTGGATTACGTGAAGATTGATCAGGCGTTCATTCGAGGCCTGGGGGAGGGTAGCGAGGACGCGGCGATTACCCGGGCGATCATC GCCATGGCTCACGGCTTGTCGTTGAAGGTAGTGGCGGAAGGGGTCGAGCGTCAGGAGCAACTTGAATTCCTCAAGCAAGAGCACTGCGACGAGGTGCAAG GGTATCTGATCAGCCGGCCCATCGAGGCGGAGAGCCTGGCGATCCTGTTGCGGGAGCAATTCGCCGGTTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
ATGGCAAGATTTCCCGTCGGGCAGGTTTGAATGCCGACGGGAAATCGGGAATATGATGTTTTTAGTGGGTCATCAGAACTTCATCGATATGGTGAATTAA CTTTCCGTCGTGAAAGATACTGACGCCGGTGACATAGGATTCGCCAGATACTTTATATTCGACAAGTTTGTCGGTCTCGACCTGTAAAGAAATTTGATTG GAAGTTTCAAGTTTCAAATCCAGGCTAAGGTCATAGGATTTGTCCTGTATCGGACTGAGTTCAAGCTTGGGTGTGATGCCCGTATGGGCAACGGTCACAG TGCCGAAGGTGCGGAAAGATTTGGCGCCAGGCATGCGATCGATTTGTGCGGTCCAGTTCTTCGTTTTAATGCTCATGATATAGAGTTCCTTTAATTAATT GTTGTTGCTTCCTGCGGAGTTAATATATCGAGCAAAGTTTGATTGCGGGTAATAAAATAAAGTTGTGTTTGTAAGGTTATGTATATTGTTTTTATTGTTC
|
|
| Amino Acid Sequence |
>diguanylate cyclase
MIFSSHLSGPTVEPRVIRKQYAMEMAVERTRLLYQGSLLPTLFMLINGLVCAGLLWSPQRYFLVSVWMVWLLSLVALRVIQVAAFDSAIPNRQAHPVWRR MFLLGSGLTGLTLAGAGIALVPADNFIQQAWVFGLIGAAALSASVAYAVSLPGFLSFTLPCLLPAIAYLFWGGDEQAQGWGWFGLILLGALSVVAWQVNR LIDRELLRRFQNQALIEHLQQAQNCSDQLNQKLASEVEQRRRAENELREIQAGLESRVAQRSLELDAANQALSKSEARLALALEASELGLWDWNLQTDEV HHTQIQELFGLEPEYVTAMLRHLKPRLHPDDLPALRKALVEHLKGRTEDYQIEYRVRHADGHWVWIEDRGRAVERAENGRVIRMVGTRRDISASKALEEQ QQLAATVFEAASEGIVIFDPNYALIAINQAFSRVTGYEIEDMLGRNVVELPCSRDARRHYGAIHQALEQYGSWQGELVETRKNGEMYPQWLQLSTVRDTR GKVSHIVGFFSDLSARRESEERMRYLTHYDELTGLANRAMFRERLSEAHQRVRQGGYRSLALLHINLDRFKQLNDSLGHEVADQLLQKMARRLVNALPEA DTIARLSGDEFAVLFNSYGNLSSLARVATRLSNKLRLPLTIDGHELVVSSSMGISLLPDNAREISALVSQSNMAMQHAKHLGGNNFQFYTDSLQASTLER LQLENQLRKAIDENQLMVFYQPKLCLATGKLNAAEALVRWDHPTMGRVPPGDFIGLAEETGLIGPIGEFVLRQACWQACEWQRQGLEPIRVSVNLSVYQL RQGKLVSLVRQVLEETGLAPHYLELELTESQLLDSVEHIIANFQQLRDLGVKLAIDDFGTGYSSLSYLKRIPVDYVKIDQAFIRGLGEGSEDAAITRAII AMAHGLSLKVVAEGVERQEQLEFLKQEHCDEVQGYLISRPIEAESLAILLREQFAG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|