Pseudomonas sp. 11/12A, GQ39_RS24580
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Molecular Function | GO:0005515 | protein binding |
Inferred from Sequence Model
Term mapped from: InterPro:PF08447
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Classifications Manually Assigned by PseudoCAP
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Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| CDD | cd00130 | PAS | IPR000014 | PAS domain | 289 | 391 | 1.03143E-7 |
| Gene3D | G3DSA:3.20.20.450 | EAL domain | IPR035919 | EAL domain superfamily | 702 | 954 | 4.3E-102 |
| Pfam | PF00563 | EAL domain | IPR001633 | EAL domain | 705 | 940 | 3.3E-73 |
| SMART | SM00086 | pac_2 | IPR001610 | PAC motif | 474 | 516 | 6.6E-4 |
| Coils | Coil | Coil | - | - | 693 | 713 | - |
| NCBIfam | TIGR00229 | JCVI: PAS domain S-box protein | IPR000014 | PAS domain | 274 | 400 | 1.9E-9 |
| Coils | Coil | Coil | - | - | 265 | 285 | - |
| FunFam | G3DSA:3.20.20.450:FF:000001 | Cyclic di-GMP phosphodiesterase yahA | - | - | 700 | 954 | 3.3E-93 |
| SUPERFAMILY | SSF55785 | PYP-like sensor domain (PAS domain) | IPR035965 | PAS domain superfamily | 395 | 513 | 2.74E-23 |
| SMART | SM00052 | duf2_2 | IPR001633 | EAL domain | 699 | 945 | 3.3E-123 |
| NCBIfam | TIGR00254 | JCVI: diguanylate cyclase (GGDEF) domain | IPR000160 | GGDEF domain | 526 | 686 | 7.6E-29 |
| SUPERFAMILY | SSF55785 | PYP-like sensor domain (PAS domain) | IPR035965 | PAS domain superfamily | 283 | 395 | 5.48E-18 |
| Pfam | PF00990 | Diguanylate cyclase, GGDEF domain | IPR000160 | GGDEF domain | 527 | 684 | 3.1E-40 |
| Pfam | PF08447 | PAS fold | IPR013655 | PAS fold-3 | 304 | 387 | 2.4E-22 |
| Gene3D | G3DSA:3.30.450.20 | PAS domain | - | - | 400 | 525 | 8.8E-29 |
| Pfam | PF13426 | PAS domain | IPR000014 | PAS domain | 413 | 514 | 9.5E-14 |
| PANTHER | PTHR44757 | DIGUANYLATE CYCLASE DGCP | - | - | 380 | 953 | 0.0 |
| SMART | SM00091 | pas_2 | IPR000014 | PAS domain | 402 | 468 | 6.0E-5 |
| CDD | cd00130 | PAS | IPR000014 | PAS domain | 411 | 513 | 6.61989E-7 |
| Gene3D | G3DSA:3.30.450.20 | PAS domain | - | - | 269 | 390 | 6.1E-35 |
| SUPERFAMILY | SSF141868 | EAL domain-like | IPR035919 | EAL domain superfamily | 704 | 952 | 8.76E-91 |
| Gene3D | G3DSA:3.30.70.270 | - | IPR043128 | Reverse transcriptase/Diguanylate cyclase domain | 526 | 701 | 2.4E-48 |
| NCBIfam | TIGR00229 | JCVI: PAS domain S-box protein | IPR000014 | PAS domain | 399 | 522 | 3.3E-17 |
| Coils | Coil | Coil | - | - | 212 | 253 | - |
| CDD | cd01948 | EAL | IPR001633 | EAL domain | 705 | 944 | 1.39439E-111 |
| SMART | SM00091 | pas_2 | IPR000014 | PAS domain | 277 | 344 | 13.0 |
| SUPERFAMILY | SSF55073 | Nucleotide cyclase | IPR029787 | Nucleotide cyclase | 532 | 691 | 4.55E-41 |
| CDD | cd01949 | GGDEF | IPR000160 | GGDEF domain | 528 | 687 | 4.73197E-49 |
| SMART | SM00086 | pac_2 | IPR001610 | PAC motif | 351 | 394 | 3.1E-9 |
| SMART | SM00267 | duf1_3 | IPR000160 | GGDEF domain | 516 | 689 | 5.7E-50 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.