Pseudomonas sp. 11/12A, GQ39_RS06535
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. 11/12A GQ39DRAFT_scf7180000000022_quiver_dupTrim_8682.1_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GGCCGGGCAGCGATTCCTCGAAATCTGGTCCGGGTTGCCGGTGCTCTATCTGCTGATCATCCTGGCCAGTTTTGTCCAGCCCAATTTCTGGTGGCTGCTG GGCATCATGCTGTTGTTTTCCTGGATGAGCCTGGTCGACGTGGTGCGCGCCGAATTCCTGCGGGGGCGCAACCTGGAATACGTACGCGCGGCCCGGGCGC TGGGCATGCAGAATGGGGCGATCATGTTCCGCCACATCCTGCCCAACGCCATGGTCTCGACCATGACCTTCATGCCGTTCATCCTGACCGGCGCCATCGG CACCCTCACCGCCCTGGATTTCCTCGGCTTCGGCCTGCCGGCGGGCAGTCCTTCCCTGGGTGAACTGGTGGCCCAGGGCAAATCCAACCTGCAAGCACCG TGGCTCGGCATGAGCGCGTTTGCGGTGTTGGCGTTGATGTTGAGTTTGCTGGTGTTTATCGGCGAGTCCGCTCGCGACGCCTTCGACCCGAGGAAGTGAA
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| DNA Sequence for Gene |
>GQ39_RS06535
ATGAATCAGGACAATCTGATCGAAGTGCGCGACCTCGCCGTCGAGTTTGTCGTCGGCGACCACTGCCAGCGTGTGGTCGAAGGGGTCAGTTTCGACATCA AGCGCGGTGAAACCCTGGCCCTGGTGGGCGAAAGCGGCTCCGGCAAATCGGTGACCGCCCACTCGATCCTGCGCCTTCTGCCCTACCCGCTCGCCCGGCA TCCGTCGGGCACCATCGCCTATTCCGGGCAAGATCTGCTGAGCCTGAAAGAGAAAACCATCCGCCACATCCGCGGCAACCGGATCGCAATGATCTTTCAG GAGCCGATGACCTCGCTCAACCCGCTGCACTCGATCGAGAAGCAGATCAACGAGGTATTGGGCATCCACAAGGGGCTGGTCGGAAAAGTCGCGACCAGGC GCACCCTGGAGTTGCTGGAAATGGTCGGCATCCCCGAGCCGCACAAGCGCCTCAAGGCCTTGCCCCATGAGTTGTCCGGCGGTCAGCGCCAGCGAGTGAT GATCGCCATGGCCCTGGCCAACGAGCCGGAACTGCTGATTGCCGACGAGCCGACCACCGCGCTGGACGTGACCGTTCAGCTGAAAATCCTCGAATTGCTC AAGGAACTACAGGCCCGCCTGGGCATGGCATTGCTGCTGATCAGCCACGATTTGAACCTGGTCAAAAGAATTGCGCATCGCGTATGTGTCATGCAGCGCG GTTGCATCGTCGAACAGGCATCGTGCGAAGAATTGTTCCGCGCGCCGCAGCATCCGTACACCCGGATCCTGCTGGCAGCGGAGCCCAGCGGTACGCCGGC GACCAATGTGGTTGGCCCGCCATTGCTGACGGTCAAGGACTTGAAAGTCTGGTTCCCGATCAAGAAAGGCTTGCTGAAAAAGACGGTGGATTACGTCAAG GCAGTGGACGGCATCAATTTCAGCCTGCCTCAGGGTCAGACCCTGGGGATCGTGGGAGAGAGCGGTTCCGGCAAGTCGACGTTGGGTCTGGCGATCCTGC GGTTGATCGGCAGCAAAGGCACCATCCGTTTTGAAGGCAAGCAGCTAGACTGCCTGACGCAACAACAGGTGCGGCCGTTGCGCAGGGAAATGCAGGTGGT GTTCCAGGACCCCTTCGGCAGCCTGAGCCCGCGGATGTGCGTGAGCCAGATCGTCGGCGAAGGCCTGCGGATCCACAAGATGGGCACCGAGGCGGAACAG GAACAAGCGATCATTGCGGCACTCAAGGAGGTAGGTCTGGACCCGGAAACCCGGCACCGCTACCCCCACGAATTTTCCGGTGGGCAACGGCAGAGAATCG CCATTGCCCGGGCATTAGTGCTAAAACCGGCGTTGATTCTGCTGGACGAGCCGACTTCGGCCCTCGACCGCACCGTGCAACGCCAAGTGGTGGAGCTTTT GCGTTCACTGCAAAGCAAGTACAACCTGACGTATCTGTTTATCAGCCATGACCTGGCTGTCGTCAAAGCGCTGAGCCACCAGCTGATGGTGGTCAAGCAT GGCCAAGTGGTCGAACAGGGAGACGCGCAAAGCATTTTTGCCGCCCCCCAACATCCGTATACACAGCAGTTGCTCGAAGCCGCTTTCCTGGCTCCAGCCA CTGCGCAATAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CCTGAAAGAGAGGAGCAACACATGGGTTTTCTCGCCGGTAAGCGCGTACTGATCGTCGGTGTCGCCAGCAAGCTGTCCATCGCATCCGGCATCGCTGCCG CCATGCATCGCGAGGGCGCTGAGCTTGCCTTCACTTATCAGAACGACAAACTGAAAGGTCGTGTCGAAGAGTTCGCGCAAGGCTGGGGTTCGAGCCCTGA GCTGTGCTTCCCGTGCGACGTGGCCAGCGATGCGGAAATCGCCAAGGTCTTCGAAGAGCTGAGCAAGAAGTGGGACGGCCTGGACTGCATCGTGCACTCC GTCGGCTTCGCCCCGGGCGACCAACTGGACGGCGACTTCACCGAAGCCACCACCCGTGAAGGTTTCCGCATCGCTCACGACATCAGCGCCTACAGCTTCG TGGCCCTGGCCAAGGCCGGTCGCGAAATGATGAAAGGCCGCAACGGCAGCCTGCTGACCCTGTCGTACCTGGGCGCCGAGCGCACCATGCCGAACTACAA
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| Amino Acid Sequence |
>microcin ABC transporter ATP-binding protein
MNQDNLIEVRDLAVEFVVGDHCQRVVEGVSFDIKRGETLALVGESGSGKSVTAHSILRLLPYPLARHPSGTIAYSGQDLLSLKEKTIRHIRGNRIAMIFQ EPMTSLNPLHSIEKQINEVLGIHKGLVGKVATRRTLELLEMVGIPEPHKRLKALPHELSGGQRQRVMIAMALANEPELLIADEPTTALDVTVQLKILELL KELQARLGMALLLISHDLNLVKRIAHRVCVMQRGCIVEQASCEELFRAPQHPYTRILLAAEPSGTPATNVVGPPLLTVKDLKVWFPIKKGLLKKTVDYVK AVDGINFSLPQGQTLGIVGESGSGKSTLGLAILRLIGSKGTIRFEGKQLDCLTQQQVRPLRREMQVVFQDPFGSLSPRMCVSQIVGEGLRIHKMGTEAEQ EQAIIAALKEVGLDPETRHRYPHEFSGGQRQRIAIARALVLKPALILLDEPTSALDRTVQRQVVELLRSLQSKYNLTYLFISHDLAVVKALSHQLMVVKH GQVVEQGDAQSIFAAPQHPYTQQLLEAAFLAPATAQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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