Pseudomonas sp. 10B238, RT21_RS16095
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. 10B238 scaffold10, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TCTCGGCCGCAGCCTTGTTGGTAAAGGTAACTGAAAGGATCGAGTGCAAAGATGCGCGCTCGACCTGGTGCAGCCAGGCGATGCGGTGCACCAATACGCG GGTCTTGCCCGAGCCGGCACCGGCAAGGACCAATTGACGACCCAGCGGCGCGGCCACGGCCTGGCGCTGGGCATCGTTGAGGGAGTTCAGGAGGAGAGAG AGATCGTCATGCATGGGCGCCATTCTAGCCGGAAATCCGGCCGACCCGCTCGTGCAACGGACGGGCGCCAGTCAAGCCATGGGCAGACAGAGGGCTTGGT TGGGGGAGGACAGAAACCGCGCCGGGAGCCGGGGCGGGTTGTGTCATCGACCTGTTGAAAATCCACCTGATCGATACCAGCGTATCGTCATCCACGGTCT TTGGTCGGAGAGACGATGACCAGACGCTAGCGTCGTGCCATTATCGAGGCGTGCTAAATGCACACCTATCGCTCCAGACATCCATTACAAGAACAACCCG
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| DNA Sequence for Gene |
>RT21_RS16095
ATGACCGATTCCGCACAAGCCAATCCGTCGGCGTCAATGGCCATGGAGGACCACGCCGCTTTCAACCTTGCAGAGACTGATCAGCGGGCCGAGCGCACGC GGCTGCTCTATGAGGGCTCGCGGCTCGCACTGCTGCTGATGATCATCACCAGCCTGGTATTCCCCGCCGTACTCTGGGCGGAAGGACCGAAGCTGCAATT GGCGATTTGGTCGGGTGTGACCTTTGCAATCGCCCTGCTGAGGCTGCAGCAGACGCGCAGCTTCGCCAAGGCTAGCGCCGAGGAGCAGCAGCATCCCCGC TGGTATCGATCCTTCCTGATGGCCAGTGTCGCCAGCGCGGTGACCCTGGACTACGCCATCATCGAGCTGGCCCTAGACGGGCCGTTCCTGCAACAAACGG TACTGCTCGGTTCGCTTGCCTCGGTGTTTTTTGCCGGCTGCGTGGCCTGCGGCGTATCGCTCCGCGCGTTCGGCGCCTTTGCCATCCCAGGGCTGCTTCC CGCTGCGGCGGTGCTGTTAAGCAGCGGCGAGCCCCATCTGCAGGGTTGGGGGCTGCTGGCGGCAATCGTGCTGCTGACGCTGAGCATGATTGCCTGGCAA ATGAACCGACTGGTGACGGCCAGCCTGGCGCAACGCCTGCACAACCAGTTGCTGATACGGCGATTGCAACGCATGCGGGGTGAAGCCACCGAGCTGAATG GCGAGCTGGCCCGTGAGGTCGAGCAGCGGCGCCATGCCGAGGGCCGGATGCGAGAAGCCTTCGACGGGCTCGAACGGCGGGTGATTGAGCGCACTGCCGC GCTGCGTGAAAGCGAGGCTCGCTTGAGCCTGGCGCTGGAAGCCAGTGAGCTGGGCATGTGGGACTGGGACATGGCCAACGGCGAGGTCCATCACTCGAGG ATGGACGTGGTTTTTGGTGTCGGCCTGAGTGATCGACTGCTGCTGGCCGAGCAGCAGCGTCCCGAAGTGCATCCCGAAGACGGCCCGCGTGTACGCCAGG ATATGATCGACCACCTGAAGGGCAAGACCGAAAGCTATGCCGTGCAATACCGGGCCATGCTCAACGACGGCAGTTCGATTTGGATCGAAGACCGCGGGCG TGTCACCGAGCGCGATGCTAACGGCCGGGCCTTACGCATGATCGGCACCCGGCGAGACATCAGCGAGAGCCATCGTCAGGCCGAACAATTGCGGTTAGCG GCCACGGTGTTCGAGGCGGCAGGTGAGGGCATGGCGATCATGGATCCTGAATTCCACCTGCTGGCAGTCAACCAGGCCTGCTGCACATTGTCCGGTTTCA GCCGAGAAGAACTGATCGGAAGAAGTGTCGCCCTGCTGGCGAGTTCCGAGGACAGCCGCCAGCAATATTCGGCTATTCGCGAAAGCCTGACACAGCACGG TATCTGGCAAGGCGAGCTGATCGAGACCCGCAAGAATGGCGAGGTCTACCCGCAATGGGCACAGATGCGAGTGGTGCACGACCGGCACGGCAATGTCACC AACGTGGTCGCGTTCGTTTCCGATCTCAGCGTCAGACGCCAGGTCGAGGAACGTCTGCGTTACCTGACCCACTTCGACGAGCTCACCGGGCTGGCCAATC GCAGCTTGCTCAAGGAGCGTCTGCACAGCGCCTGCGAGCGTAGCCGTTGCAGCAATCGCGGGCTGGCGGTTTTGTATATCGATTTGGACCGTTTCAAGAC GCTCAATGAAAGCCTTGGGCACGAGGCGGCTGATCAGCTGTTGCGTGAGGTCTCCCGCCGTCTGTCCCACACGCTGTCGGACGCCGACACCATTGCCCGT TTGTCCGGTGACGAGTTCGTGGTGGTGCTCGAAGGTTACGGCAGCCTTGCCAGCCTGGCGCACAGCGGCAGCCGCTTGCTGTCGCGCATCAGCAAACCCA TTCGGCTCGACGATCAGGAACTGGTCATCACCGCGTCCATCGGCGTCAGCTTGATGCCAGACAACTCGCGCGAGGCGACCTCGCTGCTGTTGCAGGCGAA TATGGCCATGCAACATGCCAAACATCTCGGCGGCAACACCCTGCAGTTCTTCACCGAGCGCTTGCAGGTGTCGAGCCTGGAAAATCTCAAGCTGGAGAAC CAACTGCGTCGCGCACTCGAGGAAGGCCAGCTGGAAGTCTTCTATCAACCGCGACTGAACGTGGCGGAAGACAGCCTGGATGCGGCCGAAGCACTGGTGC GCTGGCGGCATCCGCAGAAAGGCCTGATCGCGCCAGGCTTTTTCATTCCCCTGGCCGAAGAAACCGGGCTGATCATCCCGCTGGGTGAGTTTGTTCTGCG CGAAGCCTGCCGGCAGGCGCGTCAGTGGCAACTCGATGGACTGGCCGCCATTCGGGTGTCGGTGAACCTGTCCGTCAAACAGTTGCGCCAAGGCAATTTC GTCAGCCTGGTGCGACAGGTACTGGAGGAGACCGGGTTGCCCGCCGACCGGCTCGAGCTGGAACTGACCGAAAGTCAGCTGCTCGATGATATCGACAACG CGATCAACATCAGCCGCCAATTACGCGCGCTGGGCGTGAAGCTGGCAATCGATGACTTCGGCACCGGCTACTCCTCGCTCAGCTACCTCAAGCGCTTCCC GGTGGATTACGTGAAGATCGATCGCTCGTTCATTTCCGAACTGGATCAGGTCGGAGAAGATTCAGCCATCGTCCGGGCCATCATCGCCATGGTCCATAGC CTGGAGCTGAAGGTCGTCGCCGAGGGCGTCGAAACCCAGGCACAGGCGGATTTCCTCAAGGCCCACGGTTGCGACGAGATGCAGGGCTACCTGATCAGCC GCCCGGTGCCGGCAGATGAGTTCGTGAAGCTATTGGTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GGACTGCTTCGTAGGGTGGGCTTCAGCCCACCAGCGGTTAGGGTGGCGTAGCCCAAGCGGTGGGCTGAAGCCCACCCTACAAGGATCTAGCTGTTAGCCG CGGGTGGTGGTGCCTTCCAGTTCGCGCATCAGCAATGCATGCTGAAGGTCGACATGTTCCGGCACCGGCAGGTGGAGTACGTGACCGTCTCCGGGCGCCA CATCGACACGTTCGCCGCGCTTGTTTTCCAGTGCCTCCAGGCGGAAATTCAGGTTGCCCTGCGGCGTCATCAACTCCAGGCGATCGCCGACGGCGAAGCG GTTCTTGACGATCACTTCGGCCAGCCCGTTGCGCCGTTCGCCGGTCAGCTCGCCGACGAACTGCTGGCGCTCCGACAGCGAAAAGCCTCGCTCATAGTTC TGGTATTCGTCATGCACGTGACGACGCAGGAAGCCTTCGGTGTAGCCGCGGTGCGCGAGCGATTCCAAGGTGTCCATCAGTGACTTGTCGAAGGGTCTGC
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| Amino Acid Sequence |
>diguanylate cyclase
MTDSAQANPSASMAMEDHAAFNLAETDQRAERTRLLYEGSRLALLLMIITSLVFPAVLWAEGPKLQLAIWSGVTFAIALLRLQQTRSFAKASAEEQQHPR WYRSFLMASVASAVTLDYAIIELALDGPFLQQTVLLGSLASVFFAGCVACGVSLRAFGAFAIPGLLPAAAVLLSSGEPHLQGWGLLAAIVLLTLSMIAWQ MNRLVTASLAQRLHNQLLIRRLQRMRGEATELNGELAREVEQRRHAEGRMREAFDGLERRVIERTAALRESEARLSLALEASELGMWDWDMANGEVHHSR MDVVFGVGLSDRLLLAEQQRPEVHPEDGPRVRQDMIDHLKGKTESYAVQYRAMLNDGSSIWIEDRGRVTERDANGRALRMIGTRRDISESHRQAEQLRLA ATVFEAAGEGMAIMDPEFHLLAVNQACCTLSGFSREELIGRSVALLASSEDSRQQYSAIRESLTQHGIWQGELIETRKNGEVYPQWAQMRVVHDRHGNVT NVVAFVSDLSVRRQVEERLRYLTHFDELTGLANRSLLKERLHSACERSRCSNRGLAVLYIDLDRFKTLNESLGHEAADQLLREVSRRLSHTLSDADTIAR LSGDEFVVVLEGYGSLASLAHSGSRLLSRISKPIRLDDQELVITASIGVSLMPDNSREATSLLLQANMAMQHAKHLGGNTLQFFTERLQVSSLENLKLEN QLRRALEEGQLEVFYQPRLNVAEDSLDAAEALVRWRHPQKGLIAPGFFIPLAEETGLIIPLGEFVLREACRQARQWQLDGLAAIRVSVNLSVKQLRQGNF VSLVRQVLEETGLPADRLELELTESQLLDDIDNAINISRQLRALGVKLAIDDFGTGYSSLSYLKRFPVDYVKIDRSFISELDQVGEDSAIVRAIIAMVHS LELKVVAEGVETQAQADFLKAHGCDEMQGYLISRPVPADEFVKLLV
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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