Pseudomonas sp. 10B238, RT21_RS16095

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0005515 protein binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF08447
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SMART SM00052 duf2_2 IPR001633 EAL domain 694 940 9.6E-124
SMART SM00086 pac_2 IPR001610 PAC motif 347 390 8.4E-5
CDD cd01948 EAL IPR001633 EAL domain 700 940 1.14442E-118
SMART SM00267 duf1_3 IPR000160 GGDEF domain 512 684 1.4E-54
CDD cd00130 PAS IPR000014 PAS domain 407 509 3.3988E-10
Gene3D G3DSA:3.30.450.20 PAS domain - - 392 530 5.1E-29
Gene3D G3DSA:3.20.20.450 EAL domain IPR035919 EAL domain superfamily 694 946 1.8E-106
Pfam PF00990 Diguanylate cyclase, GGDEF domain IPR000160 GGDEF domain 524 679 1.9E-40
SMART SM00086 pac_2 IPR001610 PAC motif 470 512 6.4E-4
Gene3D G3DSA:3.30.70.270 - IPR043128 Reverse transcriptase/Diguanylate cyclase domain 531 692 1.4E-50
Pfam PF13426 PAS domain IPR000014 PAS domain 409 510 4.2E-12
Coils Coil Coil - - 688 708 -
CDD cd00130 PAS IPR000014 PAS domain 323 387 0.00728799
SUPERFAMILY SSF55073 Nucleotide cyclase IPR029787 Nucleotide cyclase 528 685 2.59E-43
NCBIfam TIGR00254 JCVI: diguanylate cyclase (GGDEF) domain IPR000160 GGDEF domain 522 682 7.0E-33
Pfam PF00563 EAL domain IPR001633 EAL domain 700 935 2.8E-79
Gene3D G3DSA:3.30.450.20 PAS domain - - 265 386 1.6E-26
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 403 510 5.76E-23
SMART SM00091 pas_2 IPR000014 PAS domain 398 464 2.7E-7
FunFam G3DSA:3.20.20.450:FF:000001 Cyclic di-GMP phosphodiesterase yahA - - 695 946 2.2E-95
SUPERFAMILY SSF141868 EAL domain-like IPR035919 EAL domain superfamily 699 945 2.88E-95
SMART SM00091 pas_2 IPR000014 PAS domain 273 340 220.0
CDD cd01949 GGDEF IPR000160 GGDEF domain 524 682 1.50133E-52
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 399 519 4.8E-18
PANTHER PTHR44757 DIGUANYLATE CYCLASE DGCP - - 274 945 0.0
Pfam PF08447 PAS fold IPR013655 PAS fold-3 323 383 2.3E-14
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 308 390 1.01E-11
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 269 397 2.4E-5
Coils Coil Coil - - 215 242 -

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.