Pseudomonas sp. 10B238, RT21_RS03440

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Cellular Component GO:0005737 cytoplasm
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM01231
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016772 transferase activity, transferring phosphorus-containing groups
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00344
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006935 chemotaxis
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM01231
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0000155 phosphorelay sensor kinase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM01231
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0004673 protein histidine kinase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM01231
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0007165 signal transduction
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01584
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0016310 phosphorylation
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00344
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0000160 phosphorelay signal transduction system
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd00088
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
MobiDBLite mobidb-lite consensus disorder prediction - - 1383 1400 -
Coils Coil Coil - - 1603 1627 -
Gene3D G3DSA:1.20.120.160 HPT domain IPR036641 HPT domain superfamily 14 137 1.9E-9
Gene3D G3DSA:1.20.120.160 HPT domain IPR036641 HPT domain superfamily 1041 1165 1.4E-13
PRINTS PR00344 Bacterial sensor protein C-terminal signature IPR004358 Signal transduction histidine kinase-related protein, C-terminal 2001 2015 1.1E-10
Pfam PF01584 CheW-like domain IPR002545 CheW-like domain 2102 2234 1.6E-23
MobiDBLite mobidb-lite consensus disorder prediction - - 1708 1725 -
Gene3D G3DSA:1.20.120.160 HPT domain IPR036641 HPT domain superfamily 1600 1726 3.8E-21
Gene3D G3DSA:3.30.565.10 - IPR036890 Histidine kinase/HSP90-like ATPase superfamily 1910 2096 5.4E-53
CDD cd00088 HPT IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 1219 1317 7.67057E-16
PANTHER PTHR43395 SENSOR HISTIDINE KINASE CHEA - - 1457 2381 0.0
SUPERFAMILY SSF50341 CheW-like IPR036061 CheW-like domain superfamily 2096 2229 3.79E-25
PRINTS PR00344 Bacterial sensor protein C-terminal signature IPR004358 Signal transduction histidine kinase-related protein, C-terminal 2057 2075 1.1E-10
SUPERFAMILY SSF47226 Histidine-containing phosphotransfer domain, HPT domain IPR036641 HPT domain superfamily 1601 1708 1.3E-17
Gene3D G3DSA:1.20.120.160 HPT domain IPR036641 HPT domain superfamily 899 1029 7.4E-17
CDD cd00088 HPT IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 747 836 1.14391E-9
Gene3D G3DSA:3.40.50.2300 - - - 2266 2385 5.3E-40
Pfam PF01627 Hpt domain IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 1454 1549 4.4E-15
MobiDBLite mobidb-lite consensus disorder prediction - - 563 624 -
Pfam PF01627 Hpt domain IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 749 824 2.2E-12
Coils Coil Coil - - 1810 1830 -
SUPERFAMILY SSF47226 Histidine-containing phosphotransfer domain, HPT domain IPR036641 HPT domain superfamily 1039 1160 7.06E-14
SMART SM00073 hpt_2 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 1219 1316 1.2E-10
SUPERFAMILY SSF47226 Histidine-containing phosphotransfer domain, HPT domain IPR036641 HPT domain superfamily 747 871 2.36E-26
MobiDBLite mobidb-lite consensus disorder prediction - - 1424 1448 -
SMART SM00073 hpt_2 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 1599 1700 2.7E-4
Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IPR003594 Histidine kinase/HSP90-like ATPase 1960 2096 1.4E-14
CDD cd00088 HPT IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 1452 1550 9.60746E-14
Gene3D G3DSA:1.20.120.160 HPT domain IPR036641 HPT domain superfamily 746 879 2.0E-28
MobiDBLite mobidb-lite consensus disorder prediction - - 610 624 -
Pfam PF01627 Hpt domain IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 1221 1321 3.5E-14
SUPERFAMILY SSF47226 Histidine-containing phosphotransfer domain, HPT domain IPR036641 HPT domain superfamily 898 1018 1.05E-17
SMART SM00073 hpt_2 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 898 994 0.26
SUPERFAMILY SSF55874 ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase IPR036890 Histidine kinase/HSP90-like ATPase superfamily 1913 2094 5.24E-37
PRINTS PR00344 Bacterial sensor protein C-terminal signature IPR004358 Signal transduction histidine kinase-related protein, C-terminal 2081 2094 1.1E-10
SMART SM00387 HKATPase_4 IPR003594 Histidine kinase/HSP90-like ATPase 1956 2097 4.6E-22
MobiDBLite mobidb-lite consensus disorder prediction - - 1358 1372 -
SUPERFAMILY SSF47226 Histidine-containing phosphotransfer domain, HPT domain IPR036641 HPT domain superfamily 1452 1572 3.66E-25
SUPERFAMILY SSF47226 Histidine-containing phosphotransfer domain, HPT domain IPR036641 HPT domain superfamily 436 558 5.47E-12
SMART SM00260 chew_2 IPR002545 CheW-like domain 2089 2233 3.4E-33
SUPERFAMILY SSF47226 Histidine-containing phosphotransfer domain, HPT domain IPR036641 HPT domain superfamily 1219 1341 6.41E-28
Pfam PF00072 Response regulator receiver domain IPR001789 Signal transduction response regulator, receiver domain 2266 2377 1.6E-26
Gene3D G3DSA:1.20.120.160 HPT domain IPR036641 HPT domain superfamily 1446 1579 6.7E-26
Coils Coil Coil - - 844 864 -
FunFam G3DSA:3.30.565.10:FF:000016 Chemotaxis protein CheA, putative - - 1912 2096 5.8E-61
SMART SM01231 H_kinase_dim_2 IPR004105 Histidine kinase CheA-like, homodimeric domain 1772 1911 2.2E-10
CDD cd16916 HATPase_CheA-like - - 1919 2094 2.79893E-79
SUPERFAMILY SSF52172 CheY-like IPR011006 CheY-like superfamily 2265 2383 2.85E-36
SMART SM00448 REC_2 IPR001789 Signal transduction response regulator, receiver domain 2264 2377 1.2E-35
Pfam PF01627 Hpt domain IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 1601 1692 1.3E-11
SMART SM00073 hpt_2 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 1452 1549 3.6E-4
CDD cd00088 HPT IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 898 1000 1.24645E-5
Pfam PF01627 Hpt domain IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 10 98 7.3E-6
Gene3D G3DSA:1.20.120.160 HPT domain IPR036641 HPT domain superfamily 1219 1348 5.1E-29
CDD cd00088 HPT IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 1602 1697 4.44295E-10
CDD cd17546 REC_hyHK_CKI1_RcsC-like - - 2266 2377 1.22848E-31
Pfam PF01627 Hpt domain IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 900 997 8.9E-11
MobiDBLite mobidb-lite consensus disorder prediction - - 1346 1400 -
Gene3D G3DSA:2.30.30.40 SH3 Domains - - 2171 2231 2.3E-20
SUPERFAMILY SSF47226 Histidine-containing phosphotransfer domain, HPT domain IPR036641 HPT domain superfamily 7 130 3.27E-20
SMART SM00073 hpt_2 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 747 844 3.4E-8
MobiDBLite mobidb-lite consensus disorder prediction - - 1706 1725 -

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.