Pseudomonas simiae 2-36, LS88_RS22720
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas simiae strain 2-36 scaffold9.1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TGGCGCCATCCCGACGAAACACTCCACACCGAGCCCGAGGCACGGGTGTCCAAGCGGCATTTCTTCCTGCTGACGCTGATCAATCCCAAGGGGTTGCTGA TCGTCTCGTTCATCGTGCCGATGCAGACGTTTATCGACTTGACCCTGTACCTGCCTTTCGTCGCACAATTCACTGCCGTGGTGATACCTGTGGGCTGCGC CTGGGTGCTGCTGGGTGCCCGCATCAAACGAGGCGGATACGCGTGGCTGACGCCGCACACCATCAACCGCACGGCGTCTGTGGTTATCAGCCTGTTCACC CTGGCGATCCTGACACGGCTGGCGGACAGCCTGATCCACCTCGGTGGCGCTCTTTAATGCCCGCCAGGCGGGGCTGGCACTTTGCCACAAGTCAAGGCAT GCTAGCCGCCCTCCGGGCGTCCGGCTTATAGTGCACGTCGCGCGCCAGTCCAGCCAAACCGCAGGATCACAGCTTGTCCAAAGTCACGCCGCCAACTCCC
|
|
| DNA Sequence for Gene |
>LS88_RS22720
CTGCGCGCCGCTCATATAGCGCCGAGAGCGCCCCTGCACGGCACCCTCAAAGGCGCATTGGCGACGCTTGTCCTTATGCTGCTCGCGTTATTGTTCTGGC AGTTGCTGGACCAGTTGCAGCAAAACCAGAAGAACCAGCAGCAGTACACCATCGACTACAGCGCCGACCTGGCTGAACAGATCAGCTTGAACATGGCCCT CAGCGCGAAAATCGCCCTGAACCTGCTGCCGATGGTCGAGCCGCCGCGTGACAGCGAACAGCAACAGGCCTTGATGCGCACCTTGCAACGCTCGCTGCCG GAGTTGCGCAGCATCGCCCTGCTCGCCCCCAGCGGCGCGATGATCAGTGACAGCGCCGCCGACAGCCAGGACGCTGCCTGGCTGGCAGAGCTGGTGCAAC GCAGCCGTGCCCAGTCCTATTACCTGAGCAACAGCAACGACGGCACCATCATCTATCTCTTGCTGCACCAGCCCAGCGGCGGCTCCCGGATGTATTGGGC GCTGCGCCTGGCCCCCAACTACCTCGCCAACCTCACCCGCCAAGACATCCAGGGCCAGCGACCGCTGTGGGTCATCGAGAATCGCATCAACCACCGTGTT GTCAGCCGGGACAGCGGCATGCCGGCGCAGTGGGCGTCCGCGCTCACCCCGGACGAGCTGAATAAAAGCGTGCTGGTCACGCCCCTGAGCAAAAGCGACT GGCAACTGCGCGGGCTGTTCGACCGTACTGCGGTGCTGGAGCAACTGCTGCCGGCTTTCATCGGCAAATGCCTGTTGGGCCTGGCGTTCTCGCTGATCCC GGTGATCGTGCTGCTGAACATGCGCCGCCGCCAGCGCCAAGTGCATGAAGGCCGCCGACGCTACCAAGACATTTTCGAAGGCACCGGCGTCGCCCTGTGC GTGCTCGACCTGATGGGCCTGAACGCATTCTTCGACAAGACCCGGCTGGAGACCCGCGAGCAACTGCACGCCTGGCTGCAGGACCACCCCAACGAGCGCC AGCAACTGCTCAAGGAACTGCGCATCACCGAGGTCAACCAGGTGGCGGTGCGTCTGTTGAACGTGGGCTCCTGCGAAGAAGCCTGGGAACGTCTGATCGA TGACTGCCCGCGAAATGTCACGTCTATCGGCCACCAGATTCTTGAGGCGGTGCTGACCCAACAGCACCAGCTCGAACTGGAAATCCAGCTCAAGGACGTG GCCGGCAACGAGCAGTACCTGTGGCTGGTGATGCGCCTGCCGGAGCAGCAGGACGATTTCAAGGCAGTGATCCTCAGCATCAGCGATATCACCAGCCGCA AGCTGATCGAGCTGTCGCTGGTGGAGCGCGAGAGCTTCTGGTCGGACGTGGTACGCACCGTGCCCGACCATCTGTATGTGCAGGACGTGATCAGCCAGCG CATGATTTTCAGCAACCACCATTTGGGCCACACCCTCGGCTACAACAAGGCCGAACTGCAGCAAATGGGCGAATATTTCTGGGAAATCCTGCTGCACCCC GAAGACGCCGAGCATTACCACGATTTGCGCCAGCAGCAGCGCCAGATCGGCTACACCACCCAATTGCAATGCCAGCTGCGCTTTCGTCACCGCAACAACC AATGGCGGCGCTTTGACATCCGCGAGCAAGCCTTGGCCCGCGACAAGACGACACAAATCAGCCGCATCATCGGCGTGGCCAAGGACATCACCGACCAGAT CGAAGCCAGCGAATCCCTGCGTGACAGCGAACAGCGCTATCGCATGCTGGCCGAAAGCATCAGCGACGTGATCTGCTCCACCGACAGCCAATTGGCCCTC AACTACATCAGCCCTTCGGTCAACGCTGTGCTCGGTTATGACGTGGACTGGGTGTTCAAGAACGGCTGGCAGTCGATCATCGCCAACCCGCAGCAATTGA CCGGCATTTACAGCCTGATGGAAGAGGTCAGCCGCGCGCTGGGCGATCCTGAGGCGCTGAACAAGCTGCGTGATGAGATCCAGACCCAGCTGTTCCTGTT CGACTGCCTGCGCGCAGACGGTCGCAAAGTGCCGATCGAACTGCGCATGGTGCTGGTGTGGGACGAACACGGCGCCTTCGAGGGCATCCTCGGCGTAGGC CGTGATATCAGCCAGCAACGCCGCGCCGAGAAAGACCTGCGCATGGCGGCCACGGTGTTCGAACATTCGACCTCGGCGATCCTGATCACTGACCCCGCCG GTTATATCGTGCAGGCCAACGAGGCGTTCAGCCGGGTCAGCGGCTACGCGGTCAGCGATGTGCTCGACCAGTTGCCGAACATGCTCACCGTCGACGAACA ACAGGAAGCCCACCTGCGCTACGTGCTCAAGCAGCTGCATCAGCACAGCACCTGGGAAGGCGAAGTGTGGCTCAAGCGCCGCAACGGCGAGCATTACCCG GCATGGGTCGGCATTACCGCCGTGTTCGACGATGAAGGCGACCTGGCCAGCTATGTGTGTTTCTTCAGTGACATCAGTGAGCGCAAGGCCAGCGAACAAC GCATCCACCGCCTGGCCTACTACGACGCCCTCACCCACCTGCCCAACCGCACACTGTTCCAGGACCGTCTGCACACCGCGCTGCAGGCCGCTGAACGGCA AAAGTCGTGGGTGGTGCTGATGTTCCTTGACCTCGACCGCTTCAAACCCATCAACGACTCCCTGGGCCACGCCGCCGGCGACCGTATGCTCAAGGAAATG GCCACACGCCTGCTGGGTTGCGTGGCCGAAGACGATACCGTGGCACGCATGGGGGGCGACGAGTTCACCTTGCTCCTGCAGCCACGGGTCAATCGCGAAA TGGCGCTGAACCGCGCGATACATGTGGCCGAGCAGATCCTCGCCAGCCTGGTGAAGCCCTTCGTGCTGGAAGGCCGCGAGTTCTTTGTGACCGCCAGTAT CGGTATCGCCCTGAGCCCTCAGGACGGCAACGAGCTGAGCCAATTGATGAAAAACGCCGACACGGCGATGTATCACGCCAAGGAGCGTGGCAAGAACAAC TTCCAGTTCTACCAGGCCGATATGAATGCCAGCGCCCTGGAGCGCCTGGAGCTGGAAAGCGACCTGCGCCACGCCTTGGAGCAGAACGAATTCGTGCTCT ATTACCAACCGCAGTTCAGTGGCGACGGCAAGCGCCTGACCGGCGCCGAAGCCCTGCTGCGCTGGCGTCATCCACGACGTGGCCTGGTGCCGCCGGGGGA CTTCATCCCGGTGCTGGAAGAGTTGGGCCTGGTGGTCGACGTGGGCGACTGGGTGATCAGCGAAGCCTGTCGCCAGCTCAAGACCTGGCACCAGAACAAG GTGCGCGTGCCAAAGGTCTCGGTGAATATCTCCGCGCGGCAGTTCTCCGACGGCCAGTTGGGCACTCGCATCGCCACCATTCTCAAGGACACCGGCTTGC CGCCGGCGTGCCTGGAGCTGGAACTCACCGAAAGTATCCTGATGCGTGAAGTCAACGAGGCCATGCAGATCCTCGACAGTTTGAAAAACCTGGGCTTGAG CATTGCGGTTGACGACTTTGGTACCGGTTATTCCTCGCTCAACTACCTCAAGCAATTCCCGATCGACGTGCTGAAGATCGACCGGACGTTCGTCGACGGC CTGCCATCCGGCGAGCAGGACGCACAGATCGCCCGCGCTATCATTGCCATGGCCCATAGCCTGAACCTGGCGGTGATCGCCGAGGGCGTGGAAACCCATG AGCAACTGGACTTCCTGCGTGAGCATGGCTGCGACGAAGTGCAGGGTTATCTGTTCGGGCGGCCGATGCCGGCAAATAGGTTCGAGGCGCAGTTCAGCAA TGATGCGCTGTTCATGTTCGACTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
CATTCTGCGGTGGGGCAAATGGCCTCTTCGCGAGCAAGCCCGCTCCCACATTTCGACCGCATTCCCCTGAGGGAACTCGATTGAATGTGGGAGCGGGCTT GCTCGCGAAGGCGGCAGCACAGACACCGCCTATCCACAGATGAGCCCCACTTGTCCGCGACATGATGTCCTTTCATATGCCATCTAAAACCCATTGGGTT AGAATGCCCTCCTTTTCTGCCCCCGATCCTTGAGGACCGCCATGTTCAGCCGTGATTTGACTATTGCCAAGTACGACGCCGATCTCTTCGCCGCCATGGA GCAAGAAGCCGTGCGCCAGGAAGAGCACATTGAGCTGATCGCTTCGGAAAACTACACCAGCCCAGCGGTGATGGAGGCTCAAGGTTCGGTCTTGACCAAC AAGTACGCCGAAGGTTACCCAGGCAAGCGCTACTACGGTGGTTGCGAGTACGTCGACGTGGTTGAGCAACTGGCCATCGACCGTGCCAAAGAGCTGTTCG
|
|
| Amino Acid Sequence |
>diguanylate phosphodiesterase
MRAAHIAPRAPLHGTLKGALATLVLMLLALLFWQLLDQLQQNQKNQQQYTIDYSADLAEQISLNMALSAKIALNLLPMVEPPRDSEQQQALMRTLQRSLP ELRSIALLAPSGAMISDSAADSQDAAWLAELVQRSRAQSYYLSNSNDGTIIYLLLHQPSGGSRMYWALRLAPNYLANLTRQDIQGQRPLWVIENRINHRV VSRDSGMPAQWASALTPDELNKSVLVTPLSKSDWQLRGLFDRTAVLEQLLPAFIGKCLLGLAFSLIPVIVLLNMRRRQRQVHEGRRRYQDIFEGTGVALC VLDLMGLNAFFDKTRLETREQLHAWLQDHPNERQQLLKELRITEVNQVAVRLLNVGSCEEAWERLIDDCPRNVTSIGHQILEAVLTQQHQLELEIQLKDV AGNEQYLWLVMRLPEQQDDFKAVILSISDITSRKLIELSLVERESFWSDVVRTVPDHLYVQDVISQRMIFSNHHLGHTLGYNKAELQQMGEYFWEILLHP EDAEHYHDLRQQQRQIGYTTQLQCQLRFRHRNNQWRRFDIREQALARDKTTQISRIIGVAKDITDQIEASESLRDSEQRYRMLAESISDVICSTDSQLAL NYISPSVNAVLGYDVDWVFKNGWQSIIANPQQLTGIYSLMEEVSRALGDPEALNKLRDEIQTQLFLFDCLRADGRKVPIELRMVLVWDEHGAFEGILGVG RDISQQRRAEKDLRMAATVFEHSTSAILITDPAGYIVQANEAFSRVSGYAVSDVLDQLPNMLTVDEQQEAHLRYVLKQLHQHSTWEGEVWLKRRNGEHYP AWVGITAVFDDEGDLASYVCFFSDISERKASEQRIHRLAYYDALTHLPNRTLFQDRLHTALQAAERQKSWVVLMFLDLDRFKPINDSLGHAAGDRMLKEM ATRLLGCVAEDDTVARMGGDEFTLLLQPRVNREMALNRAIHVAEQILASLVKPFVLEGREFFVTASIGIALSPQDGNELSQLMKNADTAMYHAKERGKNN FQFYQADMNASALERLELESDLRHALEQNEFVLYYQPQFSGDGKRLTGAEALLRWRHPRRGLVPPGDFIPVLEELGLVVDVGDWVISEACRQLKTWHQNK VRVPKVSVNISARQFSDGQLGTRIATILKDTGLPPACLELELTESILMREVNEAMQILDSLKNLGLSIAVDDFGTGYSSLNYLKQFPIDVLKIDRTFVDG LPSGEQDAQIARAIIAMAHSLNLAVIAEGVETHEQLDFLREHGCDEVQGYLFGRPMPANRFEAQFSNDALFMFD
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|