Pseudomonas simiae 2-36, LS88_RS22720

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0005515 protein binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF08447
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:3.30.70.270 - IPR043128 Reverse transcriptase/Diguanylate cyclase domain 841 1010 4.8E-61
SMART SM00052 duf2_2 IPR001633 EAL domain 1014 1260 3.5E-129
CDD cd01948 EAL IPR001633 EAL domain 1020 1258 4.20437E-117
Pfam PF00990 Diguanylate cyclase, GGDEF domain IPR000160 GGDEF domain 839 1000 4.2E-50
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 442 573 3.1E-7
SMART SM00086 pac_2 IPR001610 PAC motif 786 828 1.6E-5
SMART SM00086 pac_2 IPR001610 PAC motif 394 433 170.0
FunFam G3DSA:3.20.20.450:FF:000001 Cyclic di-GMP phosphodiesterase yahA - - 1015 1269 3.1E-103
SMART SM00091 pas_2 IPR000014 PAS domain 714 780 7.5E-7
SMART SM00091 pas_2 IPR000014 PAS domain 445 515 0.12
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 718 834 2.2E-18
CDD cd01949 GGDEF IPR000160 GGDEF domain 840 1002 3.22074E-62
Pfam PF13426 PAS domain IPR000014 PAS domain 591 705 2.1E-5
SMART SM00086 pac_2 IPR001610 PAC motif 523 566 0.0016
SUPERFAMILY SSF55073 Nucleotide cyclase IPR029787 Nucleotide cyclase 844 1005 2.12E-49
Gene3D G3DSA:3.30.450.20 PAS domain - - 439 564 2.2E-14
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 574 713 7.1E-10
Gene3D G3DSA:3.30.450.20 PAS domain - - 273 438 9.7E-8
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 563 704 3.14E-15
Gene3D G3DSA:3.30.450.20 PAS domain - - 576 716 1.4E-19
Pfam PF00563 EAL domain IPR001633 EAL domain 1020 1255 4.7E-77
Gene3D G3DSA:3.20.20.450 EAL domain IPR035919 EAL domain superfamily 1014 1270 1.4E-107
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 430 564 5.93E-13
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 339 440 8.2E-6
PANTHER PTHR44757 DIGUANYLATE CYCLASE DGCP - - 714 1265 0.0
SMART SM00267 duf1_3 IPR000160 GGDEF domain 828 1004 1.8E-67
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 726 836 2.79E-23
SUPERFAMILY SSF141868 EAL domain-like IPR035919 EAL domain superfamily 1019 1266 5.1E-94
Gene3D G3DSA:3.30.450.20 PAS domain - - 717 840 4.3E-29
Pfam PF13426 PAS domain IPR000014 PAS domain 726 827 6.0E-16
Pfam PF08447 PAS fold IPR013655 PAS fold-3 469 560 1.6E-8
NCBIfam TIGR00254 JCVI: diguanylate cyclase (GGDEF) domain IPR000160 GGDEF domain 836 1002 1.9E-40
CDD cd00130 PAS IPR000014 PAS domain 587 703 0.0044424
CDD cd00130 PAS IPR000014 PAS domain 723 825 1.61569E-11
SMART SM00091 pas_2 IPR000014 PAS domain 578 644 4.0
FunFam G3DSA:3.30.70.270:FF:000001 Diguanylate cyclase domain protein - - 834 1006 4.5E-45
SMART SM00086 pac_2 IPR001610 PAC motif 664 706 0.0011

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.