Pseudomonas simiae 2-36, LS88_RS28925
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas simiae strain 2-36 scaffold5, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CAAATACACCGCCACCGTCAGCTACCTGCAGCCGTTCGCCCTGTGGGGCGAGTCGTTCAGTTTCTCCAGCCTCGCCACCGGCCAACGCAGTGAAGACATT CTGTTCAGCCCGCAGCGCATGAGCCTAGGTGGTTCTGCCTCGGTGCGTGGTTTCAAGGATCAGCAGTTGATCGGCGATAGCGGCGGCTACTGGCGCAACG AAGTGCGCTGGGCCCGTGCGGTGACCGTCGACTGGCTGCGCCCGGCTTTTGCTGAATACGGCGCCAGCGTCGGCTATGACCAAGGCGTGATCAGCAATGA TCGCTATAACGACCGTGTGCACGGCCGGGTTTCGAGCAACTCCCTGGAGCTGTTCGCCCGTGGCAAGAACCTGAGCACCAGTGTGACCTTTGCGCATTCT TTGGAACGCCCGGCAGTGATGAGCGAGCGCGAAGCGCCGATCTACTTCCGTATGGATTTCTTCCTGTAATTAAACGCCCCGCAGCAACGAGAATCTGAAA
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| DNA Sequence for Gene |
>LS88_RS28925
ATGGATGTTCGCCAATTTGCCTTTCTGGCCCGCCAACCTTCCGCGGCATTGATGCCGCGTAACTCGTTCCTCGGCCTGCCCAAGCGCGGGCTGGTGCTGA TACTGGCCAACGCGTTGTTCTGGCAGCCGCTGCTGGCCCGGGCCGACGGCATCGTGGTCAGTGCGCCGGGGACCACCGTTGGCGCGGCGGGTAATGGCGT GCCCGTGGTGAACATCGCGACGCCTAACGGCAGTGGCCTGTCCCACAACCAGTTCAAGGACTACAACGTGGGTCCCAACGGCGTGATCCTCAACAATGCC AACGGTGCGGTGACCAACACCCAGTTGGGCGGCTATATCGTCGGCAACCCCAACCTCAAGGGCGGCGCAGCCAGCGTCATCCTCAACGAAGTCAACGGCG GCAGCCCCAGCCAGCTGCGCGGCTACACCGAAGTGGCGGGGCAATCGGCCAAGGTCATCGTGGCCAACCCCTACGGCGTCACTTGCAGCGGCTGTGGTTT CATCAACACGCCAAACGTCACCCTGACCACTGGTAAACCGGTGCTCGACGCGAACGGCCAGTTGCAGCGCTACCAGGTTGATGGCGGCGCCGTGACCATC GATGGCCAGGGCTTGAACGCGAGCAACGTCGACCGCTTCGAAATCATCACCCGCTCGGCCAAGATCAACGCGCAGATCAACGCGCGCGAACTGACGGTGA TCGCCGGTCGCAATGACGTGGACGCGCGAACGCTGAACGCTACCCCACGCGCCGATGACGGCAGCACCAAGCCTGAGCTGGCCATTGATTCGTCGGCCTT GGGCGGTATGTATGCCGGCGCGATCAAGCTGGTGGGTACCGAAGCCGGTGTGGGCGTGAAACTCGACGGCACGCTTGCGGCCAGCGGCGGCGATATCCAG ATCGATGCCAATGGACGCCTGAGCATGGCGCAAACGCAGGCCACCGGTAACGTCAAAGTCACGGCGCAGAACGTCGACCTTACCGACAAGGTCTACGCCG CCGGCAACGTACAAGTGACCAGCGCCCAGGCACTGGTCAACCAGAAGAGTGTGGCCGCCGGCCAACGCATCGAAATCAAGGCGACCACGGTCACCAACCC AGGCATCATCGAAGCGGGTGTCGCGCCCGATAACAGTCGAAACACCACCGGCGACCTGGTCGTCGATGCGCAAACCGTCAACACCACCGGCAAGTTGCTG GCCAGTCGAGCCCTGGCAATCACCGCCGCGCAAGCGCTGACCAACCAGGGCGCAATCATCCAGGCCAAGAGCGTCAGCGTCAGCAGCGCCAAACTGACCA ACCAGGGCGCCACTGCACGTCTTTTCGGCGAGCAGGCCCTGACCGTCGACGCACCGGCCATTGTCAACCTCGGCGGTTTGATCCGCTTTGGTGACGGCCA GGCCGCCACGCTGACCAGTGCCTCCCTGGACAACCGCCAAGGCCGCATCGAAATGGCCGGCGGCAGCCTGGTGCTCGACAGCCGCGAGCTGAACAACAAC GGCGGGCAGGTCGTCGCCAACCAACTGACGGTCAACGCGGGCAACCTGAACAACCAGAACGGCGTGCTGCTGGCTGGCGTGACGACAGTCAACGCCACCA ACCTCGATAACAGCCTTAAAGGCTTGATCCAGGCCGACAATGGCGCGTTGAATCTCACCGTCGCCAACGCCTTCAACAACAACCAGGGTTTCGCCCAGGC CAGCACCGACCTCAGCCTCAACGCCGGCACCCTTAGCAGCAACGCCAATGGTGTGCTGAGCGCCAACACCGGCAAGCTCACTCTCGTGACTGCCCAACAG CTCAACAACGCTCAAGGCCGCTTGCAGGCCGGGCAGGGCAATGTCGAGCTGCACGCTGCAAACCTGGATAACCAGAGCGGCGTGATCGTCGGCAAGCAGC TGCTGCTCGACGTCAACGCAGGGGACATCGACAACCGCGCCGGCCGTGTGCTCGGCGACAAGCTCGACGTACGCGCCTCCGGCCTCGATAACCGCAACGC CGGCCTGCTGGCCGGTGGTGCCGAAGGCGTCAGCCTGCTGCTCAAAGGCCCGGGCCAGTTGCTCAATGCCCAAGGCCGCATCCAGAGCGAAGGCCTCTTG CAACTGCAAGGCGAGCGCCTGGACAACAGCGCCGGCATCCTGCTCGGCCAAACGGTCGACGTGACCGCCCAGCGCTTCACCAACAGCAACAAGGGCGCGC TGGTCAGCGATGGCGGCGACATCACCTTCAACGTCAGTGACCTGCTGACCAACGTCGATGGCGTGATCGACGCCGGCGAGCGCAACCTGCTGGTCAAGGC CCTCACCACCCTCAACAACGACGGCGGCACCCTGCGCGGCAAGCGTCTGGACATCGCCGCCCAGTATTTGAACAACGACAACGGCCAACTGCTGGCCGGC AACCTGGGCCTGGGCTACAGCGGCCAGAGTGTGACCAACCGCAAAGGCCTGATCCTCAGCGGCGGGGCGCACACCGAACTGGACACCGCAAGCCTGGATA ACCAGGGCGGCACTGTGCAAGGCGATACCTTGACCGTCACTGCCGACAAGGCCGACAACGGCAGCGGTGGCCTGATGGCGAGCTTGCTGGGCGACCTGCA ACTGACGGTCGAAGCCCTGACCAACCGTGGCGGCAAACTGTTCGGTAAAGAACAGGTCACCGTCAGCGGCGCGACCCTCGACAACAGCGCCAGCGGCCAG ATCAGCGGCAATGTGCTCAACCTGACCTCACGCGCTACCCTCACCAACCAGGGGGGCCTGATCGAAGCCAACCAAGGCCTGACCCTCGTCGGCGGCAACC TCGACAACAGTGCCGGCGGCCAAGTGCGTGCATTGGGCGGCGCCAACAGCAGCCTCGACTTCAGCGACCAGCTAAACAACCAGAACGGTACGCTGGAGTT CGCCAGCCAGGCCTTGCGCCTCGACACCGCGAACCTCAACAACCAGGGCGGTATGTTGCAGCACGCCGGCAGTGGCCTGTTCCATATCAACACTGCCGGC CTTACTGGCAGCCAAGGCAATATCCAGGGCATGGGCACCGCTGACTGGGCATTCGGTAAAGTCGTCAGCCTCGGCCGTGTACAACTCAACGAAGTCCTTA CCTACAAAAGCGCCCAGGGCCTGACCCTCAAGGCCGGCGACCGCATGGCCAGTGGCAAGGGGTTGATCCTCGACGTAGCCAGCCTCGACAACGGCGGCGA ATTGCTCAGCGATGGTGATTTGAGCATCACCACCACCGGCGACATCACCAACAGTGGTCGTGTGTCGGCCTTGCAAAAACTCAGCGTGACGGCGAATAAC CTCAGCCAGAACGGCGGACGCCTGGCGGGCAGCCACACTCAACTGAACCTGGGCGGTACGCTGGATAACCTTGGTTTTCTTACCGCACGTCAGCAACTGG ACATTGCGGCGACCCAGATCAATAACCGAGGAACCCTGGGCGCCCAGGGTGCCGTGAACCTGCTGGCGTCGAACGGTTTCACCAATGCTGCCGATTCGCT GCTGTTCAGTGGCGGCAATATGATTTTGCGTGGCAACAACTTCAGCAATACCTACGGTGACGTGTACAGCCAGGGCAACCTCAGCTTTGCCGCCATTGAT GGCGGGCCTGCCGCCGGTTTCAGCAACCTTTCCGGCACCGTCGAAAGTACCGGCAATATCAGCATCAATGCGGCGTTTGTGGAAAACGCCAAGGCCGAAT TCGAACTCGGGCAAACCCTGCAGGGTGGGCGTGTGGAGTGGTTATGTGGCCAGCATTGCGACGGGCATGATTCGTTCAAACGTGGCCAAATCAACATCTA CCAGACCTACCTCGAATCAGCGGTCAAGGACTCGGCACCCGCTCGCCTTGTAGCAGGCAAGGATCTGCTGATCCAGGCGAATATGGTGCAGAACCGCTAC AGCCTGATGGCCGCCAATGGCAACCTGGGCATCGTCGCCAATGACCTGCTCAACCAGGGCGCGGGTACGCGCACCGGTCAAAACACCATCGTCATCGGTA CGCCGTACAGGATCGACCTTGGCTATTGGGACCAGATGGAGTACGTCGATATCCCGGCGTTCAACGCTGCGGTCGCGGCCGGTAACTTTGACCTGGCGCG TTTCGAAGCACTCAAGGCGCGTTCTTCGGATGCCCGTTTCGCTGAGGTCAGTAACGTCACCACCTGGACCGACAACACCGGCCCAGGCTATGGCGCCACC CTGCAAGCCGGCGGCACCGTCAACCTCAACGTCGCCCGCACCCTGCAAAACGGCACGTTGCACGAAAACACCCTGTCGCAATTGACCGGCACCTTGGGCG ATGACCAGACCGGCATCCCTGTCGGTGGCATCAACATCAACCTGAGCAAGCACGCCAACGACGTCAGCGCCCAGTCGCCCGGCACCGTGCTGCCAGTGGC CGGTGTCGCACCCGGCGGCGGATTCGTGCCTGTGGATTACACGGGCACGCCGTTCGCGCCGGTCGACCCCACCACCGCGCCCAACTTCCAGTTGCCCAAG GGCGAATACGGTCTGTTCGTTAAAAACGCCGACCCTACCAGCCATTACTTGATCGAAACCAACCCCGAGTTCACCTCGTTAGAGGGCTTCTTCAGCTCCG ACTACATGCTCGGCAAACTCGGCTACAGCGCCGACAACGCCTGGCGTCGCCTCGGTGACGGCCAGTACGAAACCCGCCTGATCCGCGACGCGGTGCTCGC CCAGACCGGCCAACGCTTCCTCGCTGGCGGCCTGTACAGCGACGCCGACCAATTCCGCTACCTGATGGACAACGCCCTCGCGAGCAAAGACGCCCTGCGT CTGAGTGTCGGTGTCACGCTGACCAGCCAGCAGGTCGGCGCCTTGACCCACGACATTGTGTGGATGGAAAACCGCGTAGTCGACGGCCAGACAGTCCTCG TCCCGGTGCTGTACCTGGCCCAGGCCGAATCGCGCAACGTACGCGGCAACAGCCTGATTCAGGGGCGCGACCTGAACTTGGTCACCGGCGGCGACCTGGT CAACGTCGGCACCCTGCGCGCCAGCAACAATCTCTCTGCCGCCAGCACGGGCGGTAGCATTTACACCGGCGGCCTGATCGAAGCCGGCAACAACCTGAGC CTGCTGGCCGACGACAGCATCCGCAACGCCATGGCCGGCGAAATTCGCGGCAAGCAAGTCAGCCTCGCCACGCTCAAAGGCGACATCACCAACGACACCA CCGCCATCCAGGTGCGTGACGGCGCCGGCATGCGCACCCTCAGGGACAGCGGCGCCGGCACCATCGTCGCCCGCGAAAACCTGGCCATGGACGCCCACCG CGACCTCACCAACCGCGGCGCCCTGGTCGCCGGTAACGACGCCAGCCTCGTCGCCGGCCGCGACCTCAACCTTGTTGCCGCCAGCGATACCAGCGTCAAG CATGAATTCAGCGACGGCGGCCACAAATCCAGCATCACCACCGACGTCAAAAACCTTGCCGCCACCGTCACGGCGGGGGGCAACCTGAACATGAAGGCTG GGCAGGACGTCAATATCATCGGCAGCAACGCTACCGCTGGCAAAGACATGAACGTGCAGGCTGTACGCGATTTCAACGTTGTCTCCGTTGGTGATACGCA CAACGTCGAGGGCCGGGAAAAGGATGGCAAGAAACGCATCAAGACCTCGGACGAGCAAACCACGCAAGTCGCGAGTGTGTTGACAGCTGGCAGGGACTTT ACCAGCCAGGCCGGGCGTGACACGACGCTCGTCGCCAGCAAGATCAGTGCGGGGAATGAGGCGTACCTGTACAGCGATCGGCGCTTGGGCCTGCTGGCGG GGCAAAACAGCGCCTACACACTCTATGACATGAAGAAAAATAGTGGCTGGGGGAGTAAACAAACCCGCCGCGATGAAGTGACCCGCGTGACGCACGTCGG CAGTGAAATCAATGCAGGTGGCGATATCGGCTTGATCAGTGGCAGTGACCAACTCTACCAGCGCGCCAAATTGACGAGTGGCAAAGACGTCAACATCCTC AGTGGTGGATCGGTGACGTTCGAGGCGGTCAAAGACCTGCATCAAGAAAGCCATACCAAGAGCAAAAGCGATTTGGCCTGGACGAGCTCATCAGGGCGCG GCAACACCGACGAAACCCTTCGCCAGACTCAAATCGTTGCACAGGGCAAGTTCGCGATCCAGGCCGTCGATGGCTTGAAGGTTGATATCAACCATATCGA CCAGAAAACGGTTGCCCAGACCATTGATGTGATGGTCAAGGCGGACCCGCAGTTGGCGTGGTTGAAGGATGCCGAGAAACGCGGCGATGTCGACTGGCGC CAGGTTCAAGAGGTGCATGACTCCTTTAAGTACAGCCATTCGAGTCTGGGCCAGGGCGCGATGCTGGCCATCATTATTGTCGTGACGGCGCTGACCGCGG GAGCTGCAAGCGGCCCACTGGGTGCTGCGGCCGGAGCCAGTGCCGGGTCGGGTACGGCAATGGCGGCGGCGGGCAGTTCTGCGATGGTGACGGCGGGCAC AGCGTCAGGTGTGGCGGCGGCAGGCTGGGGTAACGTGATGATTACAACGGCACTCTCTTCAATGGCAGGCACGGCGGCTGCAAGCACGATCAATAACAAG GGTAATCTTGGAAAGGTGTTTGACGATGTGACCAGCGCAGATGCGCTGAAAGGCTACGCCACGGGCGCGGCGATTGCCGGTTTTGGTGCGGCCTTCACCA ACGGTTGGGGGCGTGAATTAACATCGGACGGTAACTACAAGACGGTGAGTTATGCCGAGCGGGTCAAGGCTTATACCGCGAATACCGCACTGAAAGGCGT GTTGAGTGGCAAAGATAAAAAGTCTTGGCTGACCATCGCGGGCACGGGGGCGCTGACCGAAGTGTATGAATACTCTGCTGGCCGTGGGCCGGATGTAAGA CCAGGCGTGGACAGAGACGGAGGGGCAAAATATGACCCGCTTAGCGGTGGCTATGTTCCACAAGTTGATGAGGGTGGCGTGATAAGAGAGGGGAAAAATA TTGGTCTTAACCGTACAACAGACTGTGGTAGTTTTTATTCTGTTTGTCACGGTACTCCAGTCAGCAATATATTAAATCAAGTTCCAGGGTTTAATGGGTT TGCTACATTGCACGATGGCTGGATGATTAATTTGGAAGCCTACAAAAAAGCGGATATGTCACTTTTTGAAAATTTGGGCAGCATGCCGCCTGCTCTGATT GTGAATTATGGAGCCCTGTACGATAAGTACCGCCCAGCCATTGAATCGGAGAAAAAGCGTGAAAATTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TAAATGGCTTTTAATCGTATTATTGTCGGCCTTGGCGGGGTGCGCACCTTCCCATTCCAATTGGGAAAATGGAATGAATCTTTGGGTAGGTACTCATTTT GATTCCCATCTTTACAAGGACTGCACGCGAGGCTGTGGCGACTCATATTGGTCGCCTGTAAATGAGAACAAGACGTTTGATAAGGTTGTTGATGAAAGCG GAGGCAAACGCTATTACATAACTTGGATTAGAGATTGTCGATATTCGGTTTTTGTCGCTGCGGATCGGATAATAAAGTCATGGAGATACGAAACGTCTAA CGTAAAAGGATGTTATGTCTTTTAACGGCTGTCTTAAGCGGAGAGAAAGCATACAGATTTATTGAGTGATTACTGGCCGGTCAGCGCCAAGCCTAAATAA ATCCGTCCCCATTTTCGATATAGGCGGCTCGTCAGAAATTCTTGGAAGCAGTCTGCGCCTACGGTTCTGAAGTTATTAACGGCGTTATAACCAGTGGGTG
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| Amino Acid Sequence |
>filamentous hemagglutinin
MDVRQFAFLARQPSAALMPRNSFLGLPKRGLVLILANALFWQPLLARADGIVVSAPGTTVGAAGNGVPVVNIATPNGSGLSHNQFKDYNVGPNGVILNNA NGAVTNTQLGGYIVGNPNLKGGAASVILNEVNGGSPSQLRGYTEVAGQSAKVIVANPYGVTCSGCGFINTPNVTLTTGKPVLDANGQLQRYQVDGGAVTI DGQGLNASNVDRFEIITRSAKINAQINARELTVIAGRNDVDARTLNATPRADDGSTKPELAIDSSALGGMYAGAIKLVGTEAGVGVKLDGTLAASGGDIQ IDANGRLSMAQTQATGNVKVTAQNVDLTDKVYAAGNVQVTSAQALVNQKSVAAGQRIEIKATTVTNPGIIEAGVAPDNSRNTTGDLVVDAQTVNTTGKLL ASRALAITAAQALTNQGAIIQAKSVSVSSAKLTNQGATARLFGEQALTVDAPAIVNLGGLIRFGDGQAATLTSASLDNRQGRIEMAGGSLVLDSRELNNN GGQVVANQLTVNAGNLNNQNGVLLAGVTTVNATNLDNSLKGLIQADNGALNLTVANAFNNNQGFAQASTDLSLNAGTLSSNANGVLSANTGKLTLVTAQQ LNNAQGRLQAGQGNVELHAANLDNQSGVIVGKQLLLDVNAGDIDNRAGRVLGDKLDVRASGLDNRNAGLLAGGAEGVSLLLKGPGQLLNAQGRIQSEGLL QLQGERLDNSAGILLGQTVDVTAQRFTNSNKGALVSDGGDITFNVSDLLTNVDGVIDAGERNLLVKALTTLNNDGGTLRGKRLDIAAQYLNNDNGQLLAG NLGLGYSGQSVTNRKGLILSGGAHTELDTASLDNQGGTVQGDTLTVTADKADNGSGGLMASLLGDLQLTVEALTNRGGKLFGKEQVTVSGATLDNSASGQ ISGNVLNLTSRATLTNQGGLIEANQGLTLVGGNLDNSAGGQVRALGGANSSLDFSDQLNNQNGTLEFASQALRLDTANLNNQGGMLQHAGSGLFHINTAG LTGSQGNIQGMGTADWAFGKVVSLGRVQLNEVLTYKSAQGLTLKAGDRMASGKGLILDVASLDNGGELLSDGDLSITTTGDITNSGRVSALQKLSVTANN LSQNGGRLAGSHTQLNLGGTLDNLGFLTARQQLDIAATQINNRGTLGAQGAVNLLASNGFTNAADSLLFSGGNMILRGNNFSNTYGDVYSQGNLSFAAID GGPAAGFSNLSGTVESTGNISINAAFVENAKAEFELGQTLQGGRVEWLCGQHCDGHDSFKRGQINIYQTYLESAVKDSAPARLVAGKDLLIQANMVQNRY SLMAANGNLGIVANDLLNQGAGTRTGQNTIVIGTPYRIDLGYWDQMEYVDIPAFNAAVAAGNFDLARFEALKARSSDARFAEVSNVTTWTDNTGPGYGAT LQAGGTVNLNVARTLQNGTLHENTLSQLTGTLGDDQTGIPVGGININLSKHANDVSAQSPGTVLPVAGVAPGGGFVPVDYTGTPFAPVDPTTAPNFQLPK GEYGLFVKNADPTSHYLIETNPEFTSLEGFFSSDYMLGKLGYSADNAWRRLGDGQYETRLIRDAVLAQTGQRFLAGGLYSDADQFRYLMDNALASKDALR LSVGVTLTSQQVGALTHDIVWMENRVVDGQTVLVPVLYLAQAESRNVRGNSLIQGRDLNLVTGGDLVNVGTLRASNNLSAASTGGSIYTGGLIEAGNNLS LLADDSIRNAMAGEIRGKQVSLATLKGDITNDTTAIQVRDGAGMRTLRDSGAGTIVARENLAMDAHRDLTNRGALVAGNDASLVAGRDLNLVAASDTSVK HEFSDGGHKSSITTDVKNLAATVTAGGNLNMKAGQDVNIIGSNATAGKDMNVQAVRDFNVVSVGDTHNVEGREKDGKKRIKTSDEQTTQVASVLTAGRDF TSQAGRDTTLVASKISAGNEAYLYSDRRLGLLAGQNSAYTLYDMKKNSGWGSKQTRRDEVTRVTHVGSEINAGGDIGLISGSDQLYQRAKLTSGKDVNIL SGGSVTFEAVKDLHQESHTKSKSDLAWTSSSGRGNTDETLRQTQIVAQGKFAIQAVDGLKVDINHIDQKTVAQTIDVMVKADPQLAWLKDAEKRGDVDWR QVQEVHDSFKYSHSSLGQGAMLAIIIVVTALTAGAASGPLGAAAGASAGSGTAMAAAGSSAMVTAGTASGVAAAGWGNVMITTALSSMAGTAAASTINNK GNLGKVFDDVTSADALKGYATGAAIAGFGAAFTNGWGRELTSDGNYKTVSYAERVKAYTANTALKGVLSGKDKKSWLTIAGTGALTEVYEYSAGRGPDVR PGVDRDGGAKYDPLSGGYVPQVDEGGVIREGKNIGLNRTTDCGSFYSVCHGTPVSNILNQVPGFNGFATLHDGWMINLEAYKKADMSLFENLGSMPPALI VNYGALYDKYRPAIESEKKREN
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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