Pseudomonas rhizosphaerae DSM 16299, LT40_RS18120
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas rhizosphaerae strain DSM 16299, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
CGCCGCAACGGCCCCACACCCTGGGGCCAGTCGGCGCTTTCCCCCGCGCCCGGCACGATGATCACTGTGCCCTGAGCATCCGCGGTATTGGCCGGGCGCC ACAACGACAGGAACTCGTCGCTGCCAGCCTGCAACTGCTGCTGTTCGCTGGCGGGCAACTGACGTTCCAGTGCTTGCGCATCTTCCACGCTTCGCTCCAG CAAAGGCTGGCGAACATCCGCGGCCTCCTTGGCAGGCGCGGCCTCTTCGGCCAGGGCAACGCCGTGCAGGGGAACGAGCAGTGCCAGGCAGACAGCGCTT AGTCGAACAACTTTCATCGGTGCTTCCCTTTCAAATGCTTTGCGTCCGAATGAATGATTCGCTTCCTTGATACCGGTGAGGGTAGGGCTGCCATCAACGC AATCTGACAGGTGATCCCGTTCTCGCGGATAATCTCCAGGCCGGTCGAAATCCGAAGCCTAAAGCTTAGTGCCATTCACGCAAAGGTCGTTCATACCGAA
|
|
| DNA Sequence for Gene |
>LT40_RS18120
ATGTGCTCACTGCTGCGCCGCCTTTCCCTGCTGGGCTGGTTGTGCCTGCCACTGCTCGTGCACGGCGCTTCTGCCGTGCCCAGCCCGAAACTGCCTCTCG ATGCCGAGCAGAGCCACTGGCTGGACGCCCACCGCACCTTGCGTGTAGGGCTGGTGCTGCAACAGCCCTATGCGCAACTGGACCGTCGCCTGGGTCAGTT GTCCGGCGTCAATGTCGACCTGATGAACTGGCTGGCCAACGCCATGCAAGCGCAGTTGACCTGGCGCAACTACACCGACCAGGCGGCCCTGGAGCAGGGC TTGCGCGCGGGCGAAGTGGACCTGGCGCCGGGTCTGGCGCAAACGCCTGCGGGATTGAAGCTGTGGCAGTTTTCCGACCCCTACCTGCGCGTGCCGCAGT TGTTGGTCGGCGAGCGTAACGGCGAGATCGCGATCGACCTGGAGAAACTGTCCCCCATCGACCGGGTGGCCGTGCGTATGCCTGGCGCCGTGGCCGACTA TCTGCGCAACACCTACAGCGACCTCAACCTGCAAGGAGTGCCACTGGAGCGCCAAGCCTTGCAGTTGCTGCTCAGCCAGCAGGCACGCTATGCCGTGGTG GACGAGGCGCAGTGGGGTCGACTGTCCCGCGAGGCCGAGTTCGACAGCTTGATGGTGGTCGGCGACATCGGCTATCCCCAACTGCTGCGGGTGGCAACCC GGCGTGACTGGCCGCAGTTGGCGCACATCGTCACCGCAGCGTTGGAGTCCTTGCCCGCCAGGGACCTGGAACGGCTGCACGAGCGTTGGTTGCAGCCCCA GTCTGCACGCCTGAGCGAGTCCCGGGGGTTCTGGCAGAACCTGTGTCTGCTGCTGGCGCTGATCGCAGTGGTCAGCGTCGTCTCGCTGATCTGGCAGCGC CGCCAGGTCCATGCCCTGGAACGGCAACTGCTGGCAGCCCGAGAAGACCTGGCACAACGTACGGCGAGCGAGGAGGCCTTGCGGGTCAATCAGTTTTCCA TCGAACAAAGCACCGTCGGCATTCTCTGGGTGAACTGGGACAGCCATGTGCGCTACGCCAACCGTGCCGCCGAGCGCATGCTCGGCTACGGCACCGGCGC CGTGGTGGACAAGCCCCTGGTCGACTTCGAACCGGGCCTGAGCATGGATCGCTGGCTGAACCTGTGGCGGCTGGCGCGGACCAGCGAAGACGCTGCGCAA ACCTTCGAAACCCAGTGCGTGCGGGCCGACGGCAGTATCCTGCCCACCGACGTCTCGCTGAGCTTCCTGCGCTTTCGCGAAGCCGAATACCTGGTGGTCT ACCTCACCGACGTCACCGAACGGCGCCGCGCCCTGGCTGCGCTGCAACACAGCGAAGCCCAGCTGCGCGAGCTATCGGCGCATCTGGAAACTGTGCGCGA AGAAGAAAAGGCGCGCATTGCTCGGGAAGTTCATGACGAGCTGGGGCAGATACTTACGGTGCTGAAACTGGAAACATCCATGTGCGAACTCGCCTACGCC GACCTCGACAGCGGGCTGCGCGAGCGCCTCAACAGCATGAAGCGCCTGATCGCCCAGCTGTTCCAGCAGGTGCGCGACGTCGCCACCGCCTTGCGTCCAC CGATCCTGGACGCTGGCATTGCCTCGGCCATCGAATGGCAAGCCCATCGCTTCGAAGAACGCACCCAGATCCCCTGCCTGGTCAGCGTCCCGGAGCAACT GCCCGCGCTGGACGACGCCAAGGCAGTCGGTCTTTTCCGCATCCTGCAAGAGGCGCTGACCAATGTCATTCGCCACGCCCAGGCGCATACTGTGCAAATT GACCTGAGCCAGACAGGGCATGACCTGCACCTGTCGATCGTCGACGACGGTTGCGGCTTCGACCCGGCGCGGGTGAGCCCGCTGTCGTTTGGCCTGGTCG GCATGCGTGAACGGGTGCTGATGCTCGGGGGGCGGCTCGAACTGAGCAGCCAACTGGGGGAGGGCACGGCCCTGACCGTCACCGTGCCGTTG
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
ACTGAGACTGAGACTGAGACTGTGCCGTCGAATGACCGTACCGTCGAACCGATTTCCGGAGAGTAGCCCGATGATTCGAGTGCTGGTGGCCGAAGACCAC ACCATCGTGCGTGAAGGCATCAAGCAATTGCTTGCCCTGGCCAAGGACCTGGTGGTGGCAGGCGAGGCGGGCAACGGCGAGCAGTTGCTGGACATCTTGC GCTGCACGCCTTGCGACGTGGTCCTGCTGGACATCTCCATGCCCGGCGTCAACGGTCTGGAGGCCATTCCACGGATCCGCGCCTTGAGCCATCCGCCGGC CATTCTGGTGTTGTCCATGCACGACGAGGCGCAGATGGCCGCTCGCGCATTGAAGGTCGGCGCGGCCGGTTACGCCACCAAGGACAGCGATCCGGCTCTG CTGCTGACCGCCATCCGTCGAGTGGCAGCGGGCGGACGCTACATCGACCCAGCCTTGGCTGACCGCATGGTTTTCGAAGTCGGCCTCACCGATGCCCGCC
|
|
| Amino Acid Sequence |
>ABC transporter substrate-binding protein
MCSLLRRLSLLGWLCLPLLVHGASAVPSPKLPLDAEQSHWLDAHRTLRVGLVLQQPYAQLDRRLGQLSGVNVDLMNWLANAMQAQLTWRNYTDQAALEQG LRAGEVDLAPGLAQTPAGLKLWQFSDPYLRVPQLLVGERNGEIAIDLEKLSPIDRVAVRMPGAVADYLRNTYSDLNLQGVPLERQALQLLLSQQARYAVV DEAQWGRLSREAEFDSLMVVGDIGYPQLLRVATRRDWPQLAHIVTAALESLPARDLERLHERWLQPQSARLSESRGFWQNLCLLLALIAVVSVVSLIWQR RQVHALERQLLAAREDLAQRTASEEALRVNQFSIEQSTVGILWVNWDSHVRYANRAAERMLGYGTGAVVDKPLVDFEPGLSMDRWLNLWRLARTSEDAAQ TFETQCVRADGSILPTDVSLSFLRFREAEYLVVYLTDVTERRRALAALQHSEAQLRELSAHLETVREEEKARIAREVHDELGQILTVLKLETSMCELAYA DLDSGLRERLNSMKRLIAQLFQQVRDVATALRPPILDAGIASAIEWQAHRFEERTQIPCLVSVPEQLPALDDAKAVGLFRILQEALTNVIRHAQAHTVQI DLSQTGHDLHLSIVDDGCGFDPARVSPLSFGLVGMRERVLMLGGRLELSSQLGEGTALTVTVPL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|