Pseudomonas rhizosphaerae DSM 16299, LT40_RS18120

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF07730
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0000155 phosphorelay sensor kinase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF07730
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0000160 phosphorelay signal transduction system
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF07730
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0046983 protein dimerization activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF07730
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
CDD cd01007 PBP2_BvgS_HisK_like - - 44 264 8.17527E-38
SUPERFAMILY SSF55874 ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase IPR036890 Histidine kinase/HSP90-like ATPase superfamily 544 664 9.04E-20
SUPERFAMILY SSF53850 Periplasmic binding protein-like II - - 43 265 8.24E-30
CDD cd16917 HATPase_UhpB-NarQ-NarX-like - - 578 663 2.99259E-31
Coils Coil Coil - - 448 468 -
Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IPR003594 Histidine kinase/HSP90-like ATPase 575 664 4.6E-8
Gene3D G3DSA:3.30.450.20 PAS domain - - 317 438 1.4E-18
PANTHER PTHR24421 NITRATE/NITRITE SENSOR PROTEIN NARX-RELATED - - 203 664 2.8E-66
Gene3D G3DSA:3.30.565.10 - IPR036890 Histidine kinase/HSP90-like ATPase superfamily 544 663 1.7E-30
SMART SM00062 AABind_6 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF 46 267 2.2E-12
Gene3D G3DSA:1.20.5.1930 - - - 439 528 8.7E-12
Pfam PF13426 PAS domain IPR000014 PAS domain 340 440 2.4E-9
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 334 447 2.2E-11
CDD cd00130 PAS IPR000014 PAS domain 347 438 6.56096E-4
SMART SM00387 HKATPase_4 IPR003594 Histidine kinase/HSP90-like ATPase 573 664 3.7E-8
Gene3D G3DSA:3.40.190.10 - - - 131 226 1.7E-41
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 340 449 4.47E-20
Pfam PF07730 Histidine kinase IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain 469 535 1.5E-13
Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF 54 265 1.6E-20
Gene3D G3DSA:3.40.190.10 - - - 36 263 1.7E-41

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.