Pseudomonas rhizosphaerae DSM 16299, LT40_RS15455
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas rhizosphaerae strain DSM 16299, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
CAATTGCGTGCCCTGGCTGCGTTGTCCGAAGCCCAGGTCGCCGTGGATGCCGCGCAACTGAACCTCGATCGCTCGGTGATCCGCAGCCCGGTGGACGGTT TCATCAACGACCGCGCGCCACGCCCGCGCGAGTTCGTCACCGCAGGCCGCGCCGTGCTGGCCGTGGTGGATGGCACCTCGTTCCATATCGATGGCTATTT CGAGGAAACCAAACTGGGCGTGATTCACGTCGGCCAGGCCGTGGACATTCGCATGATGGGCGACAACACGCGTCTGCAGGGCCGGGTGCAGAGCATCTCG GCCGGCATCGAAGACCGCGATCGCAGCAGTGGCAGCAACCTGCTGCCCAACGTCAACCCGGCCTTCAGCTGGGTGCGCCTGGCGCAGCGGATTCCCGTGC GCATTGCCTTCGAAAATCTGCCCGAAGGCTATCGCCTGATCGCCGGCCGCACGGCCACGGTGTCGATCATCGAAGACGGTGTGGTAGCGGGAGCGGCGCA
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| DNA Sequence for Gene |
>LT40_RS15455
ATGAGCAAGGCCCTGCGTCTTTCCGGCCTCGCGGCGGCGCTGCTGTTGTCGGCCTGCCAGATGGTCGGGCCCGATTACCATACCCCTCAGGAAGCGGCGC TCAATCGAGCCGACTTGCAGGGCTCGCTCGCCGAAGGCGACAGTAACGTGGTCTCGGCGCCGGTCCCGCAGGATTGGTGGAAGCTGTACCACGATCCGCG CCTGGATGCGTTGGTGCGCCAGGCCATGGCGTCGAACACCGACCTGCGCGTGGCCGCGGCCAATATCGCTCGCTCCCGCGCGCAGATCGAGCAGGCCCAG GCCGAAGGCGGGTTCGATTTCAACGCCAAGGCCGAGGCGCAGCGTTTGCAGGAGTCAGGCGAAGCCTTCCTGATGACCGAGAAACTGCCTGTGGATAACC TGGGCAGCGCTTCGCTCAATTTGTCCTACCAATTCGATTTATGGGGCACGCTCAAGCGCGGCATCGAAGCGGCGCGTGCCAGTGCCGACGCCACCCAGGC CGCCGCCGACACCGCACGCATCACCGTGGTCGCCGATGTGGTGCGCGCCTATACCCAAGTGTGCGCGGCCAACGAGGAATACGAGATTGCCCGGCATTCA CTCGAACTGCAGCAGGAAGGCGTGCAACTGACCCAGCGCCTGCGCGATGCCGGCCGTGGCGACGAAACCCAGGTCACGCGTTCCGAAACTCAGTACAAGT CCCTAGGCGCGGAGTTGCCGCGTTACCAGGCCTCGCGCCAGGCTGGCTTGTATAAATTATCGATGCTGCTGGCCACGCCGGTCGCACAGCTGCCTGCCGA CGTGGCCAACTGCGCCGAGCTGCCGCGTATCAATCAATTGATGCCAGTGGGCGATGGCGCCGCGCTGCTCAAGCGTCGTCCCGACATTCGCCAGGCCGAA CGCCGTTTGGCGGCGGCCACCGCCAATATCGGCGTGGCCACGGGTCAGCTGTACCCGGACATCAGCATCGGCGCCACGGTCGGCACGGTGGGTATTCTCG ACGACCTCGGGCATCCGGCTACCAATCGCTGGGGCATCGGCCCGCTGATCAACTGGAACGTGCCCACCAATGGCGCGCGGGCGCGGATTCGCGAGACCGA AGCCTCGACCCAGGCCGCGTTGGCCAATTTCGATGGTGTGGTGCTCAATGCCATCCGCGAGACCCAGACGGGTCTGGCGCAATACGCCGCCTTGCTGCAG CGCCGTGATGCCCTGGCCGATGCCGAGCAATCGGCGCAGCAGGCGGCCGACCAGACCCATCAGTTCTTCCGTGCCGGGCGTGCATCGTTCCTGGCGGACT TGCAGGCGACGCGCACCTACACCGATGTGCGCGGACAACTGGCGGCAGCCAACACTCAGGTGGCCATGGAGCAGATCAACCTGTTCCTGGCCCTGGGTGG CGGTTGGGAAAGCGCCCGGCAGGTACCGAGCGCACGCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GGCTTAGAAGCCTTCCAGGACGATCTTGCCCTTGGCCGTGCCGCTTTCGATCAGCTCGTGGGCGCGGATCAGATTGGCGGCGTTGATCACCCCGTAGTGC TCGCCCAGGGTGGTGCGCAACACGCCGCTGTCGATCAGTTCGGCCACGCGTTCGAGCAGTTCGTGCTGCTTGATCATGTCCGGAGTCTGGAACAGCGAGC GGGTGAACATCAGCTCCCAGTGCAGCGACAGGGCCTTGCGCTTCATCGGCATCACGTCGAGGGTCTTCGGGTCGTCGATCAAGGCCAGTTGGCCCTGAGG GCGCAGGGCCTCGATCAGTTGCTCGAAGTGCGTGTCGGTGTGGGTCAGGCTGGCCACGTGGTCGATCTGGCCGACACCGATGGCTTCCAGCTGCGCCACC AGCGGCTGGCTGTGATCGATCACATGGTGAGCGCCCAGGTCGGTCACCCACTGACGTGTTTCATCTCGCGACGCCGTGCCGATCACGGTCAGCTTGGTCA
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| Amino Acid Sequence |
>RND transporter
MSKALRLSGLAAALLLSACQMVGPDYHTPQEAALNRADLQGSLAEGDSNVVSAPVPQDWWKLYHDPRLDALVRQAMASNTDLRVAAANIARSRAQIEQAQ AEGGFDFNAKAEAQRLQESGEAFLMTEKLPVDNLGSASLNLSYQFDLWGTLKRGIEAARASADATQAAADTARITVVADVVRAYTQVCAANEEYEIARHS LELQQEGVQLTQRLRDAGRGDETQVTRSETQYKSLGAELPRYQASRQAGLYKLSMLLATPVAQLPADVANCAELPRINQLMPVGDGAALLKRRPDIRQAE RRLAAATANIGVATGQLYPDISIGATVGTVGILDDLGHPATNRWGIGPLINWNVPTNGARARIRETEASTQAALANFDGVVLNAIRETQTGLAQYAALLQ RRDALADAEQSAQQAADQTHQFFRAGRASFLADLQATRTYTDVRGQLAAANTQVAMEQINLFLALGGGWESARQVPSAR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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