Pseudomonas rhizosphaerae DSM 16299, LT40_RS15455

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Molecular Function	GO:0015562	efflux transmembrane transporter activity	ISM Inferred from Sequence Model Term mapped from: InterPro:PF02321	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Cellular Component	GO:0016020	membrane	ISM Inferred from Sequence Model Term mapped from: InterPro:TIGR01845	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0022857	transmembrane transporter activity	ISM Inferred from Sequence Model Term mapped from: InterPro:TIGR01845	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Biological Process	GO:0055085	transmembrane transport	ISM Inferred from Sequence Model Term mapped from: InterPro:TIGR01845	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
Coils	Coil	Coil	-	-	82	102	-
Pfam	PF02321	Outer membrane efflux protein	IPR003423	Outer membrane efflux protein	288	466	1.2E-20
Pfam	PF02321	Outer membrane efflux protein	IPR003423	Outer membrane efflux protein	68	257	1.3E-21
Gene3D	G3DSA:1.20.1600.10	Outer membrane efflux proteins (OEP)	-	-	59	468	1.3E-99
PANTHER	PTHR30203	OUTER MEMBRANE CATION EFFLUX PROTEIN	-	-	6	474	2.1E-74
Gene3D	G3DSA:2.20.200.10	Outer membrane efflux proteins (OEP)	-	-	104	354	1.3E-99
NCBIfam	TIGR01845	JCVI: efflux transporter outer membrane subunit	IPR010131	RND efflux system, outer membrane lipoprotein, NodT	11	468	4.8E-85
SUPERFAMILY	SSF56954	Outer membrane efflux proteins (OEP)	-	-	4	470	8.76E-88

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.