Pseudomonas putida PD1, EX27_RS05320
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas putida strain PD1 EX27DRAFT_scaffold00017.17_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CATCGAGCCGAAAACCGGCTTCATGCTTATCGACACCCTGCTCAGCGATGAAGAAGGCGCGTTCAAGGACGCTGTGATGCACCTGATTCTGCCGGCCATC GTGCTCGGCACCATCCCGCTGGCGGTGATCGCCCGCATGACCCGCTCGTCGATGCTCGAAGTACTGCGCGAAGACTACATCCGCACCGCCCGCGCCAAAG GCCTGTCGCCGGCCCGTGTGGTGTTCGTCCATGGCCTGCGCAATGCCTTGATCCCGGTACTGACCGTGTTCGGCCTGCAGGTCGGCACGCTGCTGGCCGG TGCGGTGCTGACCGAAACCATCTTTTCCTGGCCGGGCATCGGCAAATGGCTGATCGAAGCCATCGGTGCCCGTGACTACCCCGTGGTCCAGAACGGCATC CTGTTGATCGCCTGCCTGGTGATTCTGGTCAACTTCGTCGTGGACATCCTCTACGGCCTGGCCAACCCACGCATCCGTCATCAGCGCTGAGGCCCTTGCC
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| DNA Sequence for Gene |
>EX27_RS05320
ATGACTAGCCCGATTACAAAATCCGTGTCACCGGCCAGCCCGGTGGACCAGAGCCTGCTCTACCCCTCCCCGTACAAAGAATTCTGGCAAGCCTTCGCGC GCAACAAAGGCGCGGTCATGGGCCTGGCCTTCATGTGCCTGGTGGTATTCTGCGCGCTGTTCGCGCCTTGGGTCGCCCCACATGACCCGAGCGAGCAGTA CCGCGACTTCCTGCTGACCCCGCCGGTGTGGCTGGAAGGCGGCACCTGGCAGTTCATCCTGGGCACCGACGAACTGGGCCGTGATCTGCTTTCGCGGCTG ATTCAAGGTGCACGGCTGTCGCTGCTGATCGGCCTGTCGTCAGTGGTGATGTCACTGATCCCGGGCATTCTCCTTGGCCTGCTGGCCGGCTTTTTCCCGC AGTTGCTCGGCCCGTCGATCATGCGCCTGATGGACGTGATGCTGGCGCTGCCGTCGCTGTTGCTGGCCGTGGCCATCGTCGCCATCCTCGGCCCTGGCCT GATCAACACCGTGATCGCCATCGCCATCGTTTCCCTGCCGTCCTACGTGCGCCTGACCCGCGCCGCGGTGATGGGCGAACTGAACCGCGACTACGTCACC GCTGCCCGCCTGGCCGGCGCCGGCTTGCCCCGGCTGATGTTCGTCACCGTGCTGCCCAACTGCATGGCACCGCTGATCGTGCAGGCGACCCTGAGTTTTT CCTCGGCGATCCTCGACGCCGCTGCGCTGGGTTTCCTCGGCCTCGGCGTGCAGCCGCCTACCCCCGAGTGGGGCACCATGCTGGCTTCGGCCCGGGACTA CATCGAGCGCGCCTGGTGGGTGGTAAGCCTGCCCGGCCTGACCATCCTGCTCAGTGTGCTGGCAATCAACCTGATGGGCGACGGCCTGCGCGATGCGCTG GACCCGAAACTCAAGAACGCCGCCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GGAGAACGCCATGCCACTTTTGCAGATCAACAACCTCAACGTGCGCTTCGGCGACGCCAATGCGGTACCCGTGGTGGACGGCCTTGACCTGGTGGTAGAC GCCGGCGAAATCCTGGCCATCGTCGGCGAGTCCGGCTCGGGCAAATCGGTCACCATGATGGCCCTGATGGGCCTGATCGATGCGCCCGGGCGCATCACCG CCGACGCCCTCACCTTCGACGGCACCGACATGCTCAAGCTCAGCGGCCGTCAGCGGCGCAAGGTGGTGGGCAAGGACATCGCCATGGTCTTCCAGGACCC GATGACCGCGCTCAATCCCAGCTACACCGTGGGCTTCCAGATAGAGGAAGTGTTGCGCCAGCACTTGGGCCTCAAGGGCAAGGCTGCCCGCCAGCGTGCT CTGGAGCTCTTGAAGAAGGTCGAGATTCCGGCCGCCGAAAGCCGCCTGGACGCTTACCCGCACCAGCTGTCAGGCGGCATGAGCCAACGTGTGGCGATCG
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| Amino Acid Sequence |
>peptide ABC transporter
MTSPITKSVSPASPVDQSLLYPSPYKEFWQAFARNKGAVMGLAFMCLVVFCALFAPWVAPHDPSEQYRDFLLTPPVWLEGGTWQFILGTDELGRDLLSRL IQGARLSLLIGLSSVVMSLIPGILLGLLAGFFPQLLGPSIMRLMDVMLALPSLLLAVAIVAILGPGLINTVIAIAIVSLPSYVRLTRAAVMGELNRDYVT AARLAGAGLPRLMFVTVLPNCMAPLIVQATLSFSSAILDAAALGFLGLGVQPPTPEWGTMLASARDYIERAWWVVSLPGLTILLSVLAINLMGDGLRDAL DPKLKNAA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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