Pseudomonas putida PD1, EX27_RS05320
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Biological Process | GO:0055085 | transmembrane transport |
Inferred from Sequence Model
Term mapped from: InterPro:PF00528
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
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| Cellular Component | GO:0016020 | membrane |
Inferred from Sequence Model
Term mapped from: InterPro:PF00528
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Classifications Manually Assigned by PseudoCAP
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Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| PANTHER | PTHR43386 | OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN APPC | - | - | 28 | 304 | 9.0E-90 |
| Pfam | PF00528 | Binding-protein-dependent transport system inner membrane component | IPR000515 | ABC transporter type 1, transmembrane domain MetI-like | 122 | 305 | 8.7E-29 |
| SUPERFAMILY | SSF161098 | MetI-like | IPR035906 | MetI-like superfamily | 99 | 286 | 1.27E-27 |
| CDD | cd06261 | TM_PBP2 | IPR000515 | ABC transporter type 1, transmembrane domain MetI-like | 104 | 286 | 2.10081E-17 |
| Gene3D | G3DSA:1.10.3720.10 | - | IPR035906 | MetI-like superfamily | 94 | 301 | 9.0E-22 |
| Pfam | PF12911 | N-terminal TM domain of oligopeptide transport permease C | IPR025966 | Oligopeptide transport permease C-like, N-terminal domain | 23 | 75 | 2.7E-13 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.