Pseudomonas putida YKD221, TR32_RS08930
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas putida strain YKD221, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GGCGAAACATCGCCATTGGAACAATATGTTAGCGGCGACCGACGGTTCGGGGCCGCTGCACGATAGTCGCAGGTGACGAGGGAATATGTAACATGATGAT ACCCAGCAGATGTGACCGGAGCTTGCGAGTCGCGTGCCCCGTTATTGAAGACTTGAACTACAGCGATCCCGTCGTATAATCGAAATTAACGAATAACGTT AAGCATTCAGCTCATGATTCAAAGCTTTAGCTGTGCCGACACGGAAGCGCTCTTCACAACGGGAAAGACACGGCGCTGGTCAGATATCAAGTCAGTCGCG GAGCGCAAACTGGCCATGCTCGATGCCGCAACAGAGTTGCGAGACCTTAGGTCGCCACCTGGCAATCGCCTCGAGTCACTGAGCGGCAACCGCGCCGGCC AACACAGTATCCGTGTAAATGACCAATGGCGGTTGTGCTTCACCTGGACAGAGCACGGGCCAGTTAACGTTGAAATTGTCGATTACCACTGAGGTGCATC
|
|
| DNA Sequence for Gene |
>TR32_RS08930
ATGCTCAAGAACGGTATGCGTCCAATCCATCCGGGTGAAATCCTGCGGGAGGACTTCCAAAAGGAAATGGGCTTCAGCGCCGCGGCTCTGGCCAGGGCGT TGGGTGTAGCAACGCCAACCGTCAACAACATCCTGCGCGAACGGGGCGGTGTTTCCGCCGACATGGCACTGCGTCTGTCCATCTGCCTGGACACCACCCC TGAGTTCTGGCTCAACCTGCAGACGGCCTTCGATCTGCGCACAGCCGAACAGCAACACGGCGATGAGATCATCGGGTCGGTCCAGCGCCTGGTCGCTTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
ACACATCCTGATCAATAAACAGGGGCGCCACGGGCGTGGCGCCGCGAGGATCGTTCCCGCATAATCCCGCGACTGACATCGAAAAACGGAGAGATTGGGG CGACTTGTAACCCCAATGTACACAATGACCTACACGCTCTACGGCATCAAAGCCTGTGACACCATGAAAAAGGCGCGTACCTGGCTCGAAGACAAAGCCA TCGCCTACGAATTCCATGATTACAAAACCCAAGGTATCGACCGTGACAGCCTGAACCGCTGGTGCGACGAACACGGCTGGGAAGTCATCCTCAACCGTGC CGGCACCACCTTCCGCAAGCTGGACGACGCCAGCAAGGCCAACCTCGACCAGGCCAAGGCCGTCGAGCTGATGCTGGCCCAGCCGTCGATGATCAAACGC CCGGTGCTCGACCTTGGCGCGCGTACCCTGGTTGGCTTCAAGCCCGACCTGTACGCCGCTGCCCTGGCCTGAGCCCCCACCCTATTTCGCACGAGGTAAT
|
|
| Amino Acid Sequence |
>XRE family transcriptional regulator
MLKNGMRPIHPGEILREDFQKEMGFSAAALARALGVATPTVNNILRERGGVSADMALRLSICLDTTPEFWLNLQTAFDLRTAEQQHGDEIIGSVQRLVA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|