Pseudomonas putida YKD221, TR32_RS08930
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Feature Overview
| Strain |
Pseudomonas putida YKD221
GCF_000787655.1|latest |
| Locus Tag |
TR32_RS08930
|
| Name |
|
| Replicon | contig_74 |
| Genomic location | 2056 - 2355 (+ strand) |
Cross-References
| RefSeq | WP_003252274.1 |
| GI | 489345131 |
Product
| Feature Type | CDS |
| Coding Frame | 1 |
| Product Name |
XRE family transcriptional regulator
|
| Synonyms | |
| Evidence for Translation | |
| Charge (pH 7) | -1.56 |
| Kyte-Doolittle Hydrophobicity Value | -0.070 |
| Molecular Weight (kDa) | 10.9 |
| Isoelectric Point (pI) | 5.68 |
Subcellular localization
| Individual Mappings | |
| Additional evidence for subcellular localization |
AlphaFold 2 Protein Structure Predictions
Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.
PDB 3D Structures
| Accession | Header | Accession Date | Compound | Source | Resolution | Method | Percent Identity |
| 6FIX | ANTITOXIN | 01/19/18 | antitoxin GraA in complex with its operator | Pseudomonas putida; SYNTHETIC CONSTRUCT | 3.8 | X-RAY DIFFRACTION | 99.0 |
| 6F8S | TOXIN | 12/13/17 | Toxin-Antitoxin complex GraTA | Pseudomonas putida; Pseudomonas putida (strain ATCC 47054 / DSM 6125 / NCIMB 11950 / KT2440) | 2.5 | X-RAY DIFFRACTION | 99.0 |
| 6F8H | ANTITOXIN | 12/13/17 | antitoxin GraA | Pseudomonas putida | 2.002 | X-RAY DIFFRACTION | 99.0 |
Orthologs/Comparative Genomics
| Pseudomonas Ortholog Database | View orthologs at Pseudomonas Ortholog Database |
| Pseudomonas Ortholog Group |
POG004324 (343 members) |
| Putative Inparalogs | None Found |
Interactions
| STRING database | Search for predicted protein-protein interactions using:
Search term: TR32_RS08930
Search term: XRE family transcriptional regulator
|
Human Homologs
References
No references are associated with this feature.