Pseudomonas putida YKD221, TR32_RS18605

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
Gene3D	G3DSA:3.30.70.270	-	IPR043128	Reverse transcriptase/Diguanylate cyclase domain	426	605	2.2E-57
SMART	SM00086	pac_2	IPR001610	PAC motif	380	421	0.0065
Pfam	PF08448	PAS fold	IPR013656	PAS fold-4	314	422	1.2E-6
SUPERFAMILY	SSF55785	PYP-like sensor domain (PAS domain)	IPR035965	PAS domain superfamily	295	419	8.03E-21
CDD	cd01949	GGDEF	IPR000160	GGDEF domain	433	590	4.91205E-51
CDD	cd01948	EAL	IPR001633	EAL domain	608	842	4.64728E-104
SMART	SM00267	duf1_3	IPR000160	GGDEF domain	421	592	4.3E-63
NCBIfam	TIGR00254	JCVI: diguanylate cyclase (GGDEF) domain	IPR000160	GGDEF domain	428	590	1.1E-42
SUPERFAMILY	SSF141868	EAL domain-like	IPR035919	EAL domain superfamily	607	853	3.14E-84
Pfam	PF05228	CHASE4 domain	IPR007892	CHASE4	62	215	2.8E-13
NCBIfam	TIGR00229	JCVI: PAS domain S-box protein	IPR000014	PAS domain	303	426	2.6E-11
FunFam	G3DSA:3.30.70.270:FF:000001	Diguanylate cyclase domain protein	-	-	427	593	4.0E-40
Gene3D	G3DSA:3.30.450.20	PAS domain	-	-	293	419	5.6E-20
SUPERFAMILY	SSF55073	Nucleotide cyclase	IPR029787	Nucleotide cyclase	437	592	3.14E-47
SMART	SM00091	pas_2	IPR000014	PAS domain	307	373	3.2E-6
Pfam	PF00563	EAL domain	IPR001633	EAL domain	608	840	5.7E-68
Pfam	PF00990	Diguanylate cyclase, GGDEF domain	IPR000160	GGDEF domain	433	587	5.0E-48
Gene3D	G3DSA:3.20.20.450	EAL domain	IPR035919	EAL domain superfamily	606	860	4.9E-92
CDD	cd00130	PAS	IPR000014	PAS domain	316	418	4.94589E-6
PANTHER	PTHR44757	DIGUANYLATE CYCLASE DGCP	-	-	282	858	0.0
Coils	Coil	Coil	-	-	596	616	-
SMART	SM00052	duf2_2	IPR001633	EAL domain	602	845	1.7E-103

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.