Pseudomonas plecoglossicida NyZ12, RK21_RS28160 (carB)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF02786
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006807 nitrogen compound metabolic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00098
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG ppj00240 Pyrimidine metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG ppj00250 Alanine, aspartate and glutamate metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG ppj01100 Metabolic pathways 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF52440 PreATP-grasp domain IPR016185 Pre-ATP-grasp domain superfamily 1 127 3.17E-49
FunFam G3DSA:3.40.50.20:FF:000001 Carbamoyl-phosphate synthase large chain - - 1 116 4.7E-54
Pfam PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain 427 505 1.3E-25
SMART SM00851 MGS_2a IPR011607 Methylglyoxal synthase-like domain 955 1041 1.2E-33
NCBIfam TIGR01369 JCVI: carbamoyl-phosphate synthase (glutamine-hydrolyzing) large subunit IPR006275 Carbamoyl-phosphate synthase, large subunit 2 1053 0.0
SUPERFAMILY SSF52335 Methylglyoxal synthase-like IPR036914 Methylglyoxal synthase-like domain superfamily 938 1069 3.92E-42
SUPERFAMILY SSF56059 Glutathione synthetase ATP-binding domain-like - - 673 933 1.45E-102
Gene3D G3DSA:3.30.470.20 - - - 119 403 0.0
Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain 128 334 1.1E-72
SUPERFAMILY SSF52440 PreATP-grasp domain IPR016185 Pre-ATP-grasp domain superfamily 558 675 1.08E-49
SUPERFAMILY SSF56059 Glutathione synthetase ATP-binding domain-like - - 128 401 1.38E-109
FunFam G3DSA:3.40.50.20:FF:000003 Carbamoyl-phosphate synthase large chain - - 554 662 2.3E-63
PANTHER PTHR11405 CARBAMOYLTRANSFERASE FAMILY MEMBER - - 6 1061 0.0
PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain 297 326 2.3E-66
PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain 239 256 2.3E-66
FunFam G3DSA:3.30.470.20:FF:000013 Carbamoyl-phosphate synthase large chain - - 665 935 0.0
Gene3D G3DSA:3.40.50.20 - - - 1 116 6.6E-49
SMART SM01096 CPSase_L_D3_2 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain 424 547 2.7E-72
Hamap MF_01210_B Carbamoyl-phosphate synthase large chain [carB]. IPR006275 Carbamoyl-phosphate synthase, large subunit 1 1062 13.08731
PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain 19 33 2.3E-66
CDD cd01424 MGS_CPS_II IPR033937 Carbamoyl-phosphate synthase large chain, methylglyoxal synthase-like domain 942 1051 3.59297E-52
FunFam G3DSA:3.40.50.1380:FF:000004 Carbamoyl-phosphate synthase large chain - - 936 1072 2.5E-61
FunFam G3DSA:3.30.1490.20:FF:000001 Carbamoyl-phosphate synthase large chain - - 686 755 4.2E-25
Gene3D G3DSA:3.30.470.20 - - - 665 935 1.8E-117
PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain 168 180 2.3E-66
Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain 673 875 4.6E-32
Hamap MF_01210_A Carbamoyl-phosphate synthase large chain [carB]. IPR006275 Carbamoyl-phosphate synthase, large subunit 5 1067 13.397923
PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain 204 223 2.3E-66
Gene3D G3DSA:3.40.50.20 - - - 554 662 3.5E-51
Gene3D G3DSA:1.10.1030.10 - IPR036897 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain superfamily 404 553 1.3E-52
FunFam G3DSA:3.30.470.20:FF:000007 Carbamoyl-phosphate synthase large chain - - 119 403 0.0
SUPERFAMILY SSF48108 Carbamoyl phosphate synthetase, large subunit connection domain IPR036897 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain superfamily 396 554 1.16E-51
FunFam G3DSA:1.10.1030.10:FF:000002 Carbamoyl-phosphate synthase large chain - - 405 553 3.7E-56
PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain 380 398 2.3E-66
PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain 48 58 2.3E-66
Pfam PF02142 MGS-like domain IPR011607 Methylglyoxal synthase-like domain 958 1041 7.6E-20
Gene3D G3DSA:3.40.50.1380 - IPR036914 Methylglyoxal synthase-like domain superfamily 936 1072 1.3E-44

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.