Pseudomonas plecoglossicida NyZ12, RK21_RS07570

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01845
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0055085 transmembrane transport
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01845
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0015562 efflux transmembrane transporter activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF02321
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0022857 transmembrane transporter activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01845
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
NCBIfam TIGR01845 JCVI: efflux transporter outer membrane subunit IPR010131 RND efflux system, outer membrane lipoprotein, NodT 30 484 6.5E-127
Pfam PF02321 Outer membrane efflux protein IPR003423 Outer membrane efflux protein 299 482 7.5E-31
Gene3D G3DSA:1.20.1600.10 Outer membrane efflux proteins (OEP) - - 73 484 9.7E-126
Gene3D G3DSA:2.20.200.10 Outer membrane efflux proteins (OEP) - - 119 373 9.7E-126
SUPERFAMILY SSF56954 Outer membrane efflux proteins (OEP) - - 20 486 6.67E-112
Pfam PF02321 Outer membrane efflux protein IPR003423 Outer membrane efflux protein 82 275 1.3E-24
PANTHER PTHR30203 OUTER MEMBRANE CATION EFFLUX PROTEIN - - 23 489 7.3E-95
MobiDBLite mobidb-lite consensus disorder prediction - - 126 145 -
Coils Coil Coil - - 82 109 -

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.