Pseudomonas plecoglossicida NBRC 103162 = DSM 15088 assembly GCF_00073066, PPL01S_RS02115

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0007165 signal transduction
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00304
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00304
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
CDD cd06225 HAMP - - 214 258 2.87957E-9
SMART SM00283 MA_2 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain 271 539 5.5E-44
Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain 323 505 2.3E-35
PANTHER PTHR32089 METHYL-ACCEPTING CHEMOTAXIS PROTEIN MCPB - - 50 539 3.5E-78
SUPERFAMILY SSF58104 Methyl-accepting chemotaxis protein (MCP) signaling domain - - 231 540 5.89E-60
SMART SM00304 HAMP_11 IPR003660 HAMP domain 211 263 2.8E-11
Gene3D G3DSA:1.10.287.950 - - - 211 540 8.9E-69
Pfam PF12729 Four helix bundle sensory module for signal transduction IPR024478 Chemotaxis methyl-accepting receptor HlyB-like, 4HB MCP domain 3 177 5.5E-15
Pfam PF00672 HAMP domain IPR003660 HAMP domain 208 258 1.3E-11

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.