Pseudomonas parafulva CRS01-1, NJ69_RS12255

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF03186
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0048472 threonine-phosphate decarboxylase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF03186
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0009236 cobalamin biosynthetic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF03186
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG ppv00860 Porphyrin and chlorophyll metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG ppv01100 Metabolic pathways 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Hamap MF_00024 Cobalamin biosynthesis protein CbiB [cbiB]. IPR004485 Cobalamin biosynthesis CobD/CbiB 1 302 107.490364
NCBIfam TIGR00380 JCVI: adenosylcobinamide-phosphate synthase CbiB IPR004485 Cobalamin biosynthesis CobD/CbiB 8 256 3.1E-56
Pfam PF03186 CobD/Cbib protein IPR004485 Cobalamin biosynthesis CobD/CbiB 8 282 2.8E-92
Pfam PF17113 Regulatory signalling modulator protein AmpE IPR031347 Protein AmpE 148 223 3.1E-5
PANTHER PTHR34308 COBALAMIN BIOSYNTHESIS PROTEIN CBIB IPR004485 Cobalamin biosynthesis CobD/CbiB 4 297 8.3E-97

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.