Pseudomonas parafulva CRS01-1, NJ69_RS06740 (ligD)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas parafulva strain CRS01-1, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
AGGTTCATGTCGGCGGGCCCATCATCCTCGGCCGAATCCTGGGCGTCACGGGCACCCGGAACGCCGTAAAGCGTGTCCAGGCTCAGGTCGTCCATGGTCA CGTTGTCCTCGTGCAAGCTCTCGGTCAGCGCCTCGCCCCCGCTCATGCCGCTCTCGGCGACCCGCTCTGGGGAGAAATCCTGCTCCGCCTCGGCATCGGG GCGTTCGTCGCCCACGCGCCCACGGCGTTCATCCTTGCGCTCGCTGAAGTCCAGCTCACGGATGCTGCCCATGCGGTCTTCGGTGTCGTCGATTTCCTGG GGGCGGTATTTCTCGTCGTCTGCTTGGGCCATGACGGCTCTCCGGTCAAGTGCGTTCAAGCGGTCGACTCTGCGCGGCTCGGGAAAATTCAGATTTTCCT GCGCTGAAGCGAGCGGTCGGGGCGCGGGTCGGTTTTTTGAACTCTGCCGACCTGGCCTGCCTCAACCAGAGACCGATCCGCGAACGTCCCGGAGTGCGTC
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| DNA Sequence for Gene |
>NJ69_RS06740
|ligD
ATGGCCAAGCCGCTGCAGGAATACCAGCGCAAGCGCGATTTCAAGGCCACGCCCGAGCCCTCTGGCAAGGGCCGTCGCCAAGCCGCAGACCATGCGCTGC ATTTCTGCATCCAGAAGCACGACGCCAGCCACCTGCATTACGACTTCCGCCTGGAGCTGGACGGTGCACTCAAGAGCTGGGCGGTGCCCAAAGGGCCGTC ACTGGACCCCAGCGTGCGTCGCCTGGCCGTACACGTTGAAGATCATCCGCTGGATTACGCCGACTTCGAAGGGCACATTCCCGAGGGTCATTACGGCGCC GGCGATGTGATCGTTTGGGATCGGGGCGTGTGGCAGCCTGAAGGTGATCCGCAGGCGGCCTATGCCAAGGGCAAGCTGCGCTTTCGCCTGCAAGGGGAGA AGCTCGGTGGAACGTGGAATCTTTTTCGCACGCGCCTGGAAGGCAAGAAAGAACAGTGGATGCTGGTCAAGTCCGAGGACGATCACGCCCGTAGCGAGGA CGACTACAGCATCGTCGAGGACCAACCCGACAGCGTCGTCAGCGATCGCACCCTGGCGCCGCGCACGCGCAATACCGCAAAGTCCACACCCGCCCGGGCG AAAAAAGCCAGCCTGCCCCGGATACTGCAACCACAACTGGCCACGCTGGTGGACGCCCCGCCTGCGGGCGACTGGCGCTATGAAGTGAAATTCGACGGCT ACCGCATTCTGGCGCGAATCGACGGCCAGGATGTGCGCCTGTTCACCCGCAACGGCCATGACTGGAGCGCGCGCATGCCGCGGCTGGTGGACGCCCTGCG TGCGCTGTCCGTGGACAGCGCCTGGCTCGACGGTGAGGTGGTGGTCAACGGCGATGACGACGTCGCGGATTTCCAGGCGCTGCAAAACGCCTTCGACCGC GATGACGACCACGCCATTCGTTATTACCTGTTCGACCTGCCCTTCCTGGGCGGCAAGGACTTGCGCCCGGTGCCGCTGTCGCAGCGCCGAGACGCGCTGC AACAGCTCCTGGCGAACGATGCATCCGATGTGCTGCATTACTCCGGCGACTTCGATCAACCGCTCGACTCGCTGCTCGACAGCGCCTGTCGTCTGGGGCT CGAAGGCCTGATCGGCAAACGTGCCGACAGCCCCTACAGCGGCCAGCGCAGCCGCGACTGGATCAAGCTCAAATGCACGCGGCGCCAGGAGTTCGTCATC GTCGGCTACACCGACCCCAAGGGCAGTCGCACGGCCTTCGGTGCCCTGCTGCTGGCCCTGCACGACGCCGACAGCGGCGAGTTGCGCTACGCCGGTCGAG TGGGCACCGGGTTCAGCGCCGCCACCCTGAAAACCATCCATGCCCAGCTCAAGCCCTTGCACAGCGCCAAGCCTGCACTGGCGAAGCCGCCCAGCGGTGC CCAGGCCCACGGCGTGCACTGGCTCAAGCCACGGTTGCTGGCCGAGGTCGCCTACGCCCAGATGACTCGCGACGGTATCGTGCGCCACGCGGTGTTCCAC GGGCTGCGCGACGACAAGCCAGCCACTGCCATCGACCTGGAACAACCCATGCCCAAGCCCGCTGCAAAGCGCCGCAAGGCCGAGCCCGAAGCCCTCGGCG ATCTGCACCTGACTCACCCGGACCGCGTCATCGATGCAACCACCGGCGTGACCAAGCGTCAGGTTCTGGAGTACTACGCCCAGGTGTCCGAATGGCTGCT GCCACAACTCAAGGATCGCCCCGTAGCCTTGGTGCGCGCACCTGAAGGGCTGAGCGGGGAGCTGTTCTTCCAGAAACATGCCGGGCAACTGCACCTGCCT CACGTGCGCACGTTCGACAAAGCCCAGGCTGGTCAGGCTGCCATGGTGCTGAACCGGGTCGACAGCGTGCTGGGCGCCGTGCAGATGAACACCTTGGAAT TTCATACCTGGAACGCCACGACCCGGGACTTCGACAAGCCCGACCGCCTGGTGCTCGACCTGGACCCGGATCCGGCGTTGCCCTGGAAAGCGATGGTCGA AGCCACCCAACTGACCCTCACCTTGCTCGAGGAACTGGGCCTGAAGGTGTTCCTCAAGACCAGCGGTGGCAAAGGCATGCACCTGGTGGTGCCGCTCACC CGACGCGCATCCTGGGAGCAGGTAAAGGCGTTCAGTCATGCCCTGGTGCAACACATGGCGGACCTGTTCCCCGAGCGCTTTTCGGCCGTGTCCGGCCCGA AGAATCGGGTGGGTCGGATCTTCATCGACTACCTGCGCAATGCCCAGGGCGCGACCACCGTCAGCGCCTATTCCTTGCGCGCGCGCGATGGACTGGCGGT GTCGGTGCCGATCTGGCCCGAGGAACTGGCGCAGCTCAAAGGCGCTGACCAGTGGACCCTCGTCAACCTGCACGAACGCCTGGCCGACCTCGACGACCCT TGGGCGCAGATGAGCATGACCCGCCAATCGATCACCGCGCGCATGCGCAAGCAACTGGGAATGGACGCCACCGCATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ACAATGATCCAACCATCGACTCAACACGCCTGGCGTCTCTGCTGCGCGCCTTCGGTGAGCGCAGCCAGGCCCTGCATCTGGACCCTGAATTGCCCAATCT GATGCAGGCATTGCAGGCCGAGGCACTCGATGAGCTGCCCCTGCCCGGCAAAGGCCAGACCTTGCAACGCTGGCAAGTGCTGGCACGCATCGGCGGTTGT GACCTGGCGCTGGCCAAGCTGTACGAGGGCCATACCGATGCCTTGGCGATTCTGGCCGAGTGCGGTGTCGCCCACTTGGCCGGCGATGGCCTCTGGGGCG TGTGGGCAGCGGAGCCGCCCGACGCACGGGCCCGAATCGTCGCCCGGGACGGCGAGCAGGTGCGACTGCAAGGCGCCAAGGCCTGGTGTTCCGGGGCCTT GCAGATCGACCGGGGGCTGATCACCGCCTGGACTGCAGACGAGAAGCCGCAACTGGTGGCCATCGACGTGTCGCATCCCAGCCAGCGCGTGATTACCGGC
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| Amino Acid Sequence |
>ATP-dependent DNA ligase
MAKPLQEYQRKRDFKATPEPSGKGRRQAADHALHFCIQKHDASHLHYDFRLELDGALKSWAVPKGPSLDPSVRRLAVHVEDHPLDYADFEGHIPEGHYGA GDVIVWDRGVWQPEGDPQAAYAKGKLRFRLQGEKLGGTWNLFRTRLEGKKEQWMLVKSEDDHARSEDDYSIVEDQPDSVVSDRTLAPRTRNTAKSTPARA KKASLPRILQPQLATLVDAPPAGDWRYEVKFDGYRILARIDGQDVRLFTRNGHDWSARMPRLVDALRALSVDSAWLDGEVVVNGDDDVADFQALQNAFDR DDDHAIRYYLFDLPFLGGKDLRPVPLSQRRDALQQLLANDASDVLHYSGDFDQPLDSLLDSACRLGLEGLIGKRADSPYSGQRSRDWIKLKCTRRQEFVI VGYTDPKGSRTAFGALLLALHDADSGELRYAGRVGTGFSAATLKTIHAQLKPLHSAKPALAKPPSGAQAHGVHWLKPRLLAEVAYAQMTRDGIVRHAVFH GLRDDKPATAIDLEQPMPKPAAKRRKAEPEALGDLHLTHPDRVIDATTGVTKRQVLEYYAQVSEWLLPQLKDRPVALVRAPEGLSGELFFQKHAGQLHLP HVRTFDKAQAGQAAMVLNRVDSVLGAVQMNTLEFHTWNATTRDFDKPDRLVLDLDPDPALPWKAMVEATQLTLTLLEELGLKVFLKTSGGKGMHLVVPLT RRASWEQVKAFSHALVQHMADLFPERFSAVSGPKNRVGRIFIDYLRNAQGATTVSAYSLRARDGLAVSVPIWPEELAQLKGADQWTLVNLHERLADLDDP WAQMSMTRQSITARMRKQLGMDATA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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