Pseudomonas parafulva CRS01-1, NJ69_RS06740 (ligD)

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Biological Process	GO:0006310	DNA recombination	ISM Inferred from Sequence Model Term mapped from: InterPro:PF04679	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Biological Process	GO:0006281	DNA repair	ISM Inferred from Sequence Model Term mapped from: InterPro:PF04679	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0003910	DNA ligase (ATP) activity	ISM Inferred from Sequence Model Term mapped from: InterPro:PF04679	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0005524	ATP binding	ISM Inferred from Sequence Model Term mapped from: InterPro:PF01068	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database	Xref	Pathway	Version	Evidence	PMID
KEGG	ppv03450	Non-homologous end-joining	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
Pfam	PF13298	DNA polymerase Ligase (LigD)	IPR014144	DNA ligase D, 3'-phosphoesterase domain	38	141	4.0E-39
Gene3D	G3DSA:2.40.50.140	-	IPR012340	Nucleic acid-binding, OB-fold	393	514	4.0E-37
MobiDBLite	mobidb-lite	consensus disorder prediction	-	-	1	27	-
SUPERFAMILY	SSF56091	DNA ligase/mRNA capping enzyme, catalytic domain	-	-	196	392	7.91E-48
CDD	cd07971	OBF_DNA_ligase_LigD	-	-	394	511	3.43819E-50
NCBIfam	TIGR02779	JCVI: non-homologous end-joining DNA ligase, ligase domain	IPR014146	DNA ligase D, ligase domain	211	512	3.3E-107
MobiDBLite	mobidb-lite	consensus disorder prediction	-	-	181	204	-
Gene3D	G3DSA:3.30.1490.70	-	-	-	222	389	1.8E-44
Pfam	PF04679	ATP dependent DNA ligase C terminal region	IPR012309	DNA ligase, ATP-dependent, C-terminal	410	506	4.2E-24
PANTHER	PTHR42705	BIFUNCTIONAL NON-HOMOLOGOUS END JOINING PROTEIN LIGD	-	-	240	818	7.2E-105
Gene3D	G3DSA:3.30.470.30	DNA ligase/mRNA capping enzyme	-	-	233	348	1.8E-44
NCBIfam	TIGR02778	JCVI: non-homologous end-joining DNA ligase, polymerase domain	IPR014145	DNA ligase D, polymerase domain	536	777	1.3E-87
SUPERFAMILY	SSF50249	Nucleic acid-binding proteins	IPR012340	Nucleic acid-binding, OB-fold	394	514	2.4E-28
NCBIfam	TIGR02776	JCVI: DNA ligase D	IPR014143	DNA ligase D	220	804	0.0
NCBIfam	TIGR02777	JCVI: DNA ligase D, 3'-phosphoesterase domain	IPR014144	DNA ligase D, 3'-phosphoesterase domain	5	160	3.4E-74
MobiDBLite	mobidb-lite	consensus disorder prediction	-	-	182	198	-
CDD	cd07906	Adenylation_DNA_ligase_LigD_LigC	-	-	209	393	1.38838E-83
Gene3D	G3DSA:3.90.920.10	DNA primase, PRIM domain	-	-	542	822	4.0E-94
Pfam	PF01068	ATP dependent DNA ligase domain	IPR012310	DNA ligase, ATP-dependent, central	215	391	2.7E-26

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.