Pseudomonas oryzihabitans RIT370, UM91_RS09270
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas oryzihabitans strain RIT370 contig7, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TGATCGAGGAACGGGGGCCCTACGAGATCCATGGCGATCCCGACATCATGCGGCCACTGGATCGGCTGCTGCAGGCCTTCGTCGAACAGCACCGGATGAA GCTGCCCGGCGGCGCGGCCTACGAGCCCTGCTATCGCGTGGTCAGCTGAATCCTTTCATGTTGGCCTTTTTGGCCGATTTCCTCCCGTCATGACCGTTCG TCCACATCCTGTTCGACGAACGGTCATGATGCTAGCCAGGTGACATCACAAAGTCGCTAGCTAGCTATCCAGAGCGCTTCGCTGACCGGCGCTCGCCGGG TGGCGAAGTCACTTTGCCGCTACAGAAAAAACCTCGCGCGCTAACTGCATAGCCGCAGGCTAAAGCCCCTCTTCACCGCGCCGATAGGGCAAGGCAAGCT AATCTCAGAGCGCAGGTTGCCGTAGTGAAATCTACCCGGGCGGAGATCCCGCCGGGCCGTCTTCCTCCAGCCGCGCCAGACTTCCTGCCGAGGCCACGGA
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| DNA Sequence for Gene |
>UM91_RS09270
ATGAACAACTGGCTGGGACTCGACTTTCTCGTCGCCCCTCTCGCCCAAGAGCAGGTGCACCTGCACGGCCAGCATGATGGCTGGCTGGTCGCCCTCGCCT ATCTGGTGGCGGTCAGCGCCTGCTATGTCACCCTGGTGTTCGCCGAGCGCATCGGCCAGACCCGCACCCTGGCCCGGCGGCGCGCCTGGAGCCTGATGGG CGCCCTGAGCTTCGGCTTCGGCGTCTGGGGCATGCACTTCATCGCCATGCTGGCCTTTACCGTGCCCACCCGGGTGCACTACGACCTCTTCATCACCCTG GCCTCGCTGCTGATCGTGGTACTGGCCGGACTCATGGCCATGCCCGCCCTCAGCCAGCCCGACCTCACCCTGGGCCAGCGGCTCAAGGCCGGCACGGTGC TGAGCGTGGGCATCGTGCTCATGCACTACACCGGCATGGCTGCGGTGCACACCGAGGCCATGGTGCTCTATCGCCCGCTGCCCTTCCTGCTGTCGATCGG CATCGCCGTGGGGGCGAGCTTCGCCGCCCTGCAGCTGATCCAGATCTTTCGTCGCCACTACACCGGCATCTATCGCTGGCTGCGCATCGCCACCGCCCTG GTGATGGGCCTGGCGATCGCCGCCATGCACTTCACCGGCATGTGGTCCATGGTGCTGGTCGCCCCGGCCGAGACCGCAGACGCCCTGCAGGGCGCCAGCA ATTCCTGGCAGCTGGGGGTGGGCATCGCCATCATCGCCCTGCTGCTGGTGGTGGGTGGCCTGGGCGCGGCCTGGGCCGATCGCCAGCTGCAGCGCAAGGA AAACGACCTGGAGCGGGTCAATTCCCTGGTCGGCCAGCTCGACGAGGCGCGCGCTTCGCTGCAACAGGCCGCGCACTACGATCCCCTCACCGACCTGCAC AATCGCCGCGCCTTCAACCAGGCCTTCGCCGAGATCCTCGAGCGCCATGCCCAGCAGGGGCGCAGCCTGGGGGTGATGTTTCTCGACATCGATCACTTCA AGCGCATCAACGACAGCCTCGGCCACGACGCCGGCGACCAGTTGCTGGTGGCCATGGCCAAGATCATTCGCGAGGCGGTGCGTGACGGCGATCTGGTGGC TCGCTTCGGTGGCGACGAATTCTGCATCCTGGCCAGCCTCGCCGGACCCGAGGAGGCCCGGCACCTGGCCCAGCGCATCCTGGAGCGTCTGCGCAATCCG GTCACCATCGGCAACCGCACCCTGGTGATGACCACCAGCATCGGCATCAGCCTCTATCCTCGCGACGGCGGCTGCTGCGAAGAGCTGCTCAAGAGCGCGG ATCTCGCGCTCTACCTGTCCAAGGGCAATGGCCGCAACACCTTCAGCTTCTTCGACGAGACCCTGCGCGAGAAGATCTCGCTGCAACTGGAGCTGGAGGC CGAACTACGCGAAGCCCTGGTCGAGGAGCGCGGCCTGCAGCTCTACTACCAGCCGATCCTCGACGTCGCCAGCGGTCAGCTGGACAAGGCCGAAGCCCTG ATCCGCTGGGACCATCCCCGCCTCGGCATGCTGGCGCCCAACTGCTTTCTCGGCGTGGCCGAGGCCAATGGCTTCGTCGAAGAGCTGGACGCCTGGGTGC TCCGGCGGGCCTGCAAGGACCTGGCCGAGCTGACCGACGCTGGCCTCACGGAGCTGCGCATCGCGGTCAACTGCTCGGCGCTGAGCCTGAGCAACGACGC CCTCCCCGGGCAGATCGCCTGGCGGCTGGACGACCACCAACTGTCGCCGCGGCGCCTGGAACTGGAGGTGACCGAAAATGCCTTGGTCAAGAACGTGCAG CCCACCGCCGAGCTGTTGCAGCGCATTCGCGACCTGGGCGTGACGGTGTCCATCGACGACTTCGGCACCGGTTATTCCTCGCTCGCCTACCTCAAGCGCC TGCCGATCGACACCGTGAAGATCGACCGCTCCTTCGTCACCGGGCTGGCCGAGGGCAACGCCGATCCCCAGATCGTCCAGGCCATCATCGGCATGGCCCG GCCGCTCAAGCTCAAGGTCACCGCCGAGGGCGTCGAGCATCTGGAGCAGCTGCGGCTGCTGTGCGCCCTGGGCTGCGACTTCATCCAGGGCTATCACATC AGCCGACCGGTCCCCCTGGCCCAGGTGCCCGAGGTGATCGCCCGCTATGCCAGCGGGGTCTGCCCACTGCAGGCCCAGGCGGAGGTGGATGCCGACGCCC TGGCGCTGGCCAGGGCGCTCGGCTAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CCGCGCCGATAGCGCAGCCAGACGCTGCCGTCGTCCTGGGCTTCGGCCGTATCCAGCTTGAGGTACAGCGGCTGCTGCCAGGCCTGCTCGGCAATCTCGA AGGAGGCCGGATGGGCGCCGCGGCCGTCCACCAGCGGGATGATCAGCACGCTGATCTCGTCCACCAGGCCGGCGGCGACAAAGGAGCCGCTGACATGGGG ACCACCCTCCACCACCAGCCGCTCGATGCCCAGTTCTGCGTTGAGCAATTCCAGCACCGCTGCCAGATCCAGTTCGTCCTTGCCACCGAAGACGTAGGAG GCACCGATGTTCTGCAGGTGCGTCAGGTAGTCATCGCTGACGCCTTCGGTCAGCACCGCCACCACGTGGGAATCCAGGGCCTCGTTCTTTTTCCAGGCCA CCTTGCCCTGGGGATCGATGGCGATGGCGTACTTGCTGGCGTCACGCTTGGCGAAATGATGGGTGCGCGGGATGGGCGCCTGGGCGACGCCGGTGGGATA
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| Amino Acid Sequence |
>diguanylate phosphodiesterase
MNNWLGLDFLVAPLAQEQVHLHGQHDGWLVALAYLVAVSACYVTLVFAERIGQTRTLARRRAWSLMGALSFGFGVWGMHFIAMLAFTVPTRVHYDLFITL ASLLIVVLAGLMAMPALSQPDLTLGQRLKAGTVLSVGIVLMHYTGMAAVHTEAMVLYRPLPFLLSIGIAVGASFAALQLIQIFRRHYTGIYRWLRIATAL VMGLAIAAMHFTGMWSMVLVAPAETADALQGASNSWQLGVGIAIIALLLVVGGLGAAWADRQLQRKENDLERVNSLVGQLDEARASLQQAAHYDPLTDLH NRRAFNQAFAEILERHAQQGRSLGVMFLDIDHFKRINDSLGHDAGDQLLVAMAKIIREAVRDGDLVARFGGDEFCILASLAGPEEARHLAQRILERLRNP VTIGNRTLVMTTSIGISLYPRDGGCCEELLKSADLALYLSKGNGRNTFSFFDETLREKISLQLELEAELREALVEERGLQLYYQPILDVASGQLDKAEAL IRWDHPRLGMLAPNCFLGVAEANGFVEELDAWVLRRACKDLAELTDAGLTELRIAVNCSALSLSNDALPGQIAWRLDDHQLSPRRLELEVTENALVKNVQ PTAELLQRIRDLGVTVSIDDFGTGYSSLAYLKRLPIDTVKIDRSFVTGLAEGNADPQIVQAIIGMARPLKLKVTAEGVEHLEQLRLLCALGCDFIQGYHI SRPVPLAQVPEVIARYASGVCPLQAQAEVDADALALARALG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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