Pseudomonas oryzihabitans RIT370, UM91_RS18135
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas oryzihabitans strain RIT370 contig19, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCGGCGGCCCGCGGCCATCGACCAGCAGAATCGGCGCTTCGTCCCCCATGTCCTGGCGGTGGCCACCGGGACGGCGGTGAGCTTTCCCAATACCGACGAC ATCCGCCATCAGGTCTATTCCTTTTCCAGCCCGAAGCGCTTCGAGCTGCCGCTCTACCACGGGCTTCCCAGCACGCCGGTGGTGTTCGACCAACCGGGCG TGGTGGTGGTGGGCTGCAATATCCACGACTGGATGGTGGGATACGTCTACGTGACCACCGCCGGGCGCTCCGCGGTGACCGACAGTCAGGGCCAGGCCCG CCTGGAGGCGCCGGACGGTCATTATCAGCTGGCACTGTGGCACCCCGACCTCAGCGACAAGCAGGAGGTCGCCCAGCCTGCGCTGGACGTGGCGGGCAAG CCGGTGACCCTGAAACTCCCGCTGGCGGTTCAGCCGAAGCCGCAGTCCGCGGAGCCGGCGAGCTCGGCTTTCGAGGATGCCTTCCACAAGGCCACGCACG
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| DNA Sequence for Gene |
>UM91_RS18135
ATGAAGCTCATCCCTAGTTTCCAGACCCGCATCGCCGGCAGTCTCTTCCTGCTGATGCTGGTGGTCATCACCCTGGTCTATCTGACGGTCAAGGCCGCCA CCGAGGCCAGTGCGGTGCGCCAGTCCTATGACCAGCTCGACACCGGGGCGCGGGTCTTTCGCCAGGTGCTGGACGGGCGCTGCCGCCGGCTGAACGATGC CGTGCGGGTGCTCGCCGCCGATTTCGGCTTTCGCGATGCCGTCGCCAGTGGCGATGTGCCGACCCTGAGGTCGGCGCTGGCCAACCATGGCGCCCGGGTG GGCGCAGGCGATACCTATCTGCTGGATCTGGACGGCCGGCTGATCGCCAGCACCGTGGCGGCGCACAGCCAAGGCGAGCGGCTGCCCGTCGCGGTGGCGT CGGGCAATGACGGCAGCTGTGTGCTGGCGGGTACCGGCCTGCCGCAATTGCGGGTCACGGTGCCGGTCCGGGCTCCTGTACCCATTGCCCAGGTGGTGAT GAGTTTCGCCATGGATCAGGCCATGGCCGAAGAATTTCGCTCGCTGATCAACCTGGACGTGGTGTTTCTCGGCGAAGCCGCGCTGATGGCCAGTACCCTG CCTGAGGAGCAGGGACGGCGGCTGCTGCCTGAGCTGGCGAACGCGCCCCGGGGCAGCGATAGCTGGCAGCTGGCCCTGGGTGATCGCCGCTATCAGGTCA AGCGGCTGACCCTCGGCACCGCCGACCATCCGGTACAGGTCTATCTGCTGCGTTCGCTCGATCTGGCCATGGTCGAGTTCGAACCCCTGCTCAGGCAACT GGCGCTGATCGCCGGCGGTGCCCTGCTGGCGGCGCTGCTGGGCGCGTTGTGGCTGGCGCGCAACCTGGCCCTGCCGTTGCGGCAGCTGTCGGTGATGTCC TGGCGGATCGGCCAGGGGGACTACGGGGTCAAGGTGGAGGTCCAGCGCCGGGACGAATTCGGCCGCTTGGCGCAGGTGCTCGAAGAGATGCGCCAGGGCA TCGCCGAGCGCGAGCAGCGGCTCAATCACAATGCCTTGCACGACGCCCTGACCGGATTGCCCAATCGCATCCTGGCCGAGGAACGCCTGCGGGTCTTTAT CGCCACCCAGTCCCAGGTTTCGCTGCTGTACCTGGGGCTGGATGGCTTCCAGGCAATCAATGAAAGCGCCGGGGTCGCCGGCGGCGATCGCATCCTCAGG ATGGTGGCCGAGCGCGCTCAGGTGCTGCTGGCCGGGCGTGGCTGCGTGTCGCGACCGGTAGGGGACGAATTTCTCGTACAGTTCTGCCGTGTCGGCCTGG AAGGTGCGGTGGGGCTCGCCGAGCAGTTGCGTCTGTCGCTGGCCGAACCCATCGAGTGGGAAGGTCAGTTGTATCGTCTCAGTTGCCGGATCGGCGTCGT CGAGTATCCGCGCCATGGCGACGATCCGACCCAGCTGATCGAGCGCGCGCGCAGCGCCATGCTCGATGCCGGGCAGTTGCCGGATCGCCTGCGGGTCTAT GATGAAGGTCGGGATGCGGCCCAGCAGCGGCGTCTGCAACTGGTCCACGATCTGCCGCTGGCGGGCGAGCGGGGGGAATTGATGCTGGTGTTCCAACCCA AGGTGGCCTTGCAAGGTAATGGGCCGCACCAGGCCGAGGTGCTGCTGCGCTGGCGGCACGCCGAACTGGGCATGGTCTCGCCGGGTGAATTCATTCCCCT GGCCGAGCGCAGTGGCAGCATGGCCGGACTCACCCGCTGGGTGATCCAGGCGGCGATCCGGCAACTGGCGCTCTGGCAGACCCAGGGCCGCGAGGTCAAG GTGTCGCTGAACGTCTCGGCGGTCGACCTGGCCGATGCCCGACTGCCCGAGCGGGTGATGGGCTGGCTGGATGACGCCGGCGTCTCGGCGCGGCAGCTGA CCTTCGAGATCACCGAGAGCGCCATCATGGCCGATCCGGAAGCGGCCATCGCGCTGCTGACCCGGCTCTCCGTGCTGGGCATCCGGTTGTCGGTGGACGA CTACGGCACCGGCCAGGCTTCCCTGGCACACCTGAAGCGGCTGCCGGTGGACGAATTGAAGATCGACCAGTCCTTCGTGAAGGAGCTGGCACCGGGCAAC GATGACGCCGTCATCGTCCGCTCGACCATCGAGATGGGCCACAACCTGGGTCTGGAGGTGGTAGCCGAAGGGGTCGAGGAAGCCCGAGCCCTGGCGCTGT TGCGCAGCTGGGGCTGCGATGTGATCCAGGGGTACTACATCAGCCGCCCGGTACCGGCCGTGGAATTCGAGGCCTGGATGGAACGGCAGAGCCAGCCGGT GCTGGAGGCGCTGTCATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AGCGTGGCTGGCTGCTAGCGGGGTTGCTGCTGGCGACCGGGGTGCAGGCCGACGGCGGCAAGCTGCTGGCCACCGGTGGCGCCAGCAGTCTGGAAGGCGC GGCGGGTGGGGGCATCACGCCCTGGGCGGGGATCGGCGGCTATGGCGAAAGCGGCCAGCCCGGCGCCACCGCCTTTGCCACCCGGGTATGGACCGGTGAC TATCGGCTCGATGCCACCGGCGTGGCAGCGGCCTATGACAATCGGGTGGAGGTCTCCTATGCCCGCCAGCGCCTGGACATGCCGACCCTGCGGCGGTTGA TGAAGCTCGAGGAAGACAGCCTCAGCCAGGACATCGTCGGCGCCAAGGTGCGCCTGGCAGGTGACCTGATCTACGACCGACTGCCGCAGATCGCCCTGGG CGTGCAGTACAAGCATCAGCGCGACTTTGGCATTCCCGCAGCTGTGGGGGCGCGGCGCGACAGCGATGTCGAGGGCTACCTGGGTGCCAGCCGGCTGTTT
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| Amino Acid Sequence |
>diguanylate cyclase
MKLIPSFQTRIAGSLFLLMLVVITLVYLTVKAATEASAVRQSYDQLDTGARVFRQVLDGRCRRLNDAVRVLAADFGFRDAVASGDVPTLRSALANHGARV GAGDTYLLDLDGRLIASTVAAHSQGERLPVAVASGNDGSCVLAGTGLPQLRVTVPVRAPVPIAQVVMSFAMDQAMAEEFRSLINLDVVFLGEAALMASTL PEEQGRRLLPELANAPRGSDSWQLALGDRRYQVKRLTLGTADHPVQVYLLRSLDLAMVEFEPLLRQLALIAGGALLAALLGALWLARNLALPLRQLSVMS WRIGQGDYGVKVEVQRRDEFGRLAQVLEEMRQGIAEREQRLNHNALHDALTGLPNRILAEERLRVFIATQSQVSLLYLGLDGFQAINESAGVAGGDRILR MVAERAQVLLAGRGCVSRPVGDEFLVQFCRVGLEGAVGLAEQLRLSLAEPIEWEGQLYRLSCRIGVVEYPRHGDDPTQLIERARSAMLDAGQLPDRLRVY DEGRDAAQQRRLQLVHDLPLAGERGELMLVFQPKVALQGNGPHQAEVLLRWRHAELGMVSPGEFIPLAERSGSMAGLTRWVIQAAIRQLALWQTQGREVK VSLNVSAVDLADARLPERVMGWLDDAGVSARQLTFEITESAIMADPEAAIALLTRLSVLGIRLSVDDYGTGQASLAHLKRLPVDELKIDQSFVKELAPGN DDAVIVRSTIEMGHNLGLEVVAEGVEEARALALLRSWGCDVIQGYYISRPVPAVEFEAWMERQSQPVLEALS
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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