Pseudomonas oryzihabitans RIT370, UM91_RS18135

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00672
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0007165 signal transduction
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00672
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF14827 Double sensory domain of two-component sensor kinase IPR029150 Double Cache domain 3 41 250 2.8E-15
CDD cd06225 HAMP - - 292 334 9.95717E-10
Gene3D G3DSA:6.10.340.10 - - - 257 341 2.7E-15
Pfam PF00672 HAMP domain IPR003660 HAMP domain 284 334 2.9E-9
SUPERFAMILY SSF158472 HAMP domain-like - - 288 336 1.83E-7
Pfam PF00563 EAL domain IPR001633 EAL domain 521 750 5.5E-69
CDD cd01948 EAL IPR001633 EAL domain 516 755 1.00004E-100
SMART SM00304 HAMP_11 IPR003660 HAMP domain 287 339 4.5E-9
CDD cd01949 GGDEF IPR000160 GGDEF domain 346 490 4.95603E-35
PANTHER PTHR33121 CYCLIC DI-GMP PHOSPHODIESTERASE PDEF - - 263 764 2.0E-124
SUPERFAMILY SSF55073 Nucleotide cyclase IPR029787 Nucleotide cyclase 350 491 9.42E-31
Gene3D G3DSA:3.30.70.270 - IPR043128 Reverse transcriptase/Diguanylate cyclase domain 342 512 1.1E-34
Gene3D G3DSA:3.20.20.450 EAL domain IPR035919 EAL domain superfamily 513 769 1.8E-91
NCBIfam TIGR00254 JCVI: diguanylate cyclase (GGDEF) domain IPR000160 GGDEF domain 341 490 2.2E-19
Pfam PF00990 Diguanylate cyclase, GGDEF domain IPR000160 GGDEF domain 345 491 1.1E-24
SMART SM00052 duf2_2 IPR001633 EAL domain 510 755 2.7E-94
SUPERFAMILY SSF141868 EAL domain-like IPR035919 EAL domain superfamily 516 762 2.09E-82
SMART SM00267 duf1_3 IPR000160 GGDEF domain 334 500 4.0E-34

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.